Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra11g1274 | ATGGATTCTATCACAATATCTAATGTTAAAATAGGTTCAAATAGTTCAAGGGACAACAGTGATATTGTGAAGACAGTGGAGAGACATAAAGCGGTGATGGAAGAATCTGAAAAAAAAGAAAAAAAAGAAGAAAAAGGAGAACAAGTTGTCTGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTAGGAACAAAGATTGTTAAGGATGAGCTCTTCCCTCAACTCCTTCGCCAACCCTCTCTCTCTTCAATCTCTTCCCTTGCATGTGGCGGGGCTCATGTCATAGCCTTGACCTTTGCTGGGAAGGTATTTTCATGGGGTAGGGGCAATTCTGGGCAACTAGGCCATGGGGAGGTTGTGAATAAGGCTTTGTTTCCCAAGGTTGTAACGTCATTGGATGGCTACTTCATAACCAATGTCGCTGCTGGGTGGAGCCACTCGGGTTTTGTTTCAGATTCTGGGTGTGTCTTCACTTGTGGGGATGGGACGTTTGGTCAACTGGGACATGGAGATTATGCCTCACACTGTTCTCCTGTCAAATTGACATGTTTTGGTGATCAGCGTGTAGCGCAGGTTGCATGTGGAATGCGTCATTCCCTGGTCTTATTGAAAGATTGTATAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAGCTGGGTGTCAGCAACGATAAGGTCAAATCTGTTAATGTTCCTAGAACTGTTACTGGCTTTGAAAGTGTTGAAATCATTGGAATTGCTGCAAATGGAGATCATAGTGCTGCAGTATCTGTATCTTTAGTTGATGGGCACGTTTATACTTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCACCTTCCTCGTTGCTTAAATTCTTCTTTTAATTTTATCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCAATGACCGGTGAGGGAGAGGTTTATATGCTAGGTGGAAACCACCATGGAGTGCTTAGTGATCTTCAGAACATAAGCCCCCCAGCCAAGCATAAACCTGTAGATTTAAGAGAAGTCAATTTGGAGAAAGTCCCTGGCCTTGATGGGATGAAGATTACTGATATTGCTACCGGAGCCGAGCATTCTGTCATTGTCACAGATAATGGAGAAATAAGAACATGGGGTTGGGGTGAGCACGGCCAACTTGGTTTAGGAGATACTTGCGATCAAATCAGTCCTGTTACAGTAAATGTAGGTTATGATCTGAATGAAACTGAATCAATTAAAGTTTTCTGTGGAAGCGGGTTCACATTTGCTGTAACTATGCCCTATATTCTCCTCACTTAA | 1296 | 0.4367 | MDSITISNVKIGSNSSRDNSDIVKTVERHKAVMEESEKKEKKEEKGEQVVWSWGAGTEGQLGTKIVKDELFPQLLRQPSLSSISSLACGGAHVIALTFAGKVFSWGRGNSGQLGHGEVVNKALFPKVVTSLDGYFITNVAAGWSHSGFVSDSGCVFTCGDGTFGQLGHGDYASHCSPVKLTCFGDQRVAQVACGMRHSLVLLKDCIGNQVYGFGSGKRGQLGVSNDKVKSVNVPRTVTGFESVEIIGIAANGDHSAAVSVSLVDGHVYTWGRGFKGFEDAHLPRCLNSSFNFIKVALGWNHALAMTGEGEVYMLGGNHHGVLSDLQNISPPAKHKPVDLREVNLEKVPGLDGMKITDIATGAEHSVIVTDNGEIRTWGWGEHGQLGLGDTCDQISPVTVNVGYDLNETESIKVFCGSGFTFAVTMPYILLT* | 432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 49 | 65 | IPR000408 | - | |
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 83 | 96 | IPR000408 | - | |
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 102 | 118 | IPR000408 | - | |
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 210 | 224 | IPR000408 | - | |
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 298 | 316 | IPR000408 | - | |
| Vra11g1274 | 431 | PRINTS | Chromosome condensation regulator RCC1 signature | 367 | 388 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 153 | 204 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 372 | 426 | IPR000408 | - | |
| Vra11g1274 | 431 | SUPERFAMILY | RCC1/BLIP-II | 49 | 258 | IPR009091 | - | |
| Vra11g1274 | 431 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Vra11g1274 | 431 | PANTHER | OS01G0777800 PROTEIN | 50 | 420 | - | - | |
| Vra11g1274 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 152 | 201 | IPR000408 | - | |
| Vra11g1274 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 50 | 96 | IPR000408 | - | |
| Vra11g1274 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 100 | 148 | IPR000408 | - | |
| Vra11g1274 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 423 | IPR000408 | - | |
| Vra11g1274 | 431 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 209 | 258 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 48 | 99 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 100 | 152 | IPR000408 | - | |
| Vra11g1274 | 431 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 50 | 420 | - | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 265 | 308 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 191 | 201 | IPR000408 | - | |
| Vra11g1274 | 431 | Gene3D | - | 277 | 425 | IPR009091 | - | |
| Vra11g1274 | 431 | Gene3D | - | 23 | 276 | IPR009091 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 309 | 371 | IPR000408 | - | |
| Vra11g1274 | 431 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 208 | 261 | IPR000408 | - | |
| Vra11g1274 | 431 | SUPERFAMILY | RCC1/BLIP-II | 208 | 424 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra11g1274 | Vra-Chr11 | 15429145 | 15435295 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra11g1274 | - | - | vra:106777800 | 859.366 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vra11g1274 | 11 | 15429145 | 15435295 | Vra11g1274 | 11 | 15429145 | 15435295 | ECH |