Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1260 ATGTCTACCGTTGCATTAGAACCTTTCATCCACCTTTGCTCCAGAAAACCTTCGTTTCATAGCCGTAAACCGATCTCACTGAGACCCTTCTTTCTGCCCACGTGCTCCTCCAATCTCAATGATGCATCCTTCATCTTCCACCACCAACCTCGTAGGACTCTGTCTCCCGTGCATGCAGCTTCAGTTACAGACACCCCTACCCTCCACCCCCTTCAATGCCCTCAGACCAGCACCAGCACTTTCGCGATCGACCGAACCCAAATGGCGAAGGGAAAGATTTTTGTGAGATTAGATCACGGAAAGGATTTGAAGGATTGGGAGCTTACGGTGGGCTGCAATCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCTTGTTCAAGATGTTGGAAGGGAATGGGATCAACCTCCTCTTGATATGATACCCCCTGGATCTGTTCCTATAAAGGACTATGCAGTAGAGACCCCTTTGAAGAAGTCATCCTTATCTGCAGAAGGAGATACGCTTCATGAAGTCAGGATTGGCCTAAGACCTAAATTTGGAATTTCAGCAATTCATTTTGTTCTCAAGGATGAGGAAACTGGAGATTGGTACAAAAACGAAAGTAAAGATTTCGTGGTTTCTTTGGTGGACTGCATTAAGGCGGATTCGGTTATAAATGAACCTAAAAGAGGCTTTGATTTTTGGCCAGGGAATTTGGGGCAATTATCTAGAATGTTCTCCAAGTTAAAAGCTGACGAAAATAGAAGTAATGAATCCAGAGTTCCAGAAGGAGAAAACAATAAACCAGAAGGTTTCTATGAGGAAGTGTATGTGACAAAGAAGATTTTAGTTAGTAACTCTGTCAGTGTCTCCACCAAGAAATGCTTTGAGTCTGGGGCAGTTAAGGACATTTTATATTTTGAAACTGATCTACCTGGAGATGTTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCAAGAAGGTGGGAAGTTCCACCTCCTCCTCATCCACCAGGAACAGTACCATTTAAAGACAGGGCCTTGAGAACTCAATTATTGCCTAGACACGATGGAAAAGGATCTTCAGCACAAATCACTTTAGAAGAAGAATTTTCAGGACTTGTTTTTGTTATTAAGCAAAATGAAAATACTTGGTTCAAGTACTCGGGAAATGACTTTTATGTTCCCCTCTCAAGTTCTAGCAACTTGCTTAATATTGGCAACAAAGAGGATGTGTCAGAAGGTGTGCAGATTGAAAAGCCCAGTCAGCAAAATTCTTTCTTTGCATTTACTGATACAGTAGCCTATGAAATAAGAAATTTGGTCACAGACAACTCCTCTGAGAAGAAACAAAAGAGAAAATCTAAAAAGGTGCAACAAAGCATTTTTGAAGAAATTGAAAGGCTGGCTGCTGAAGCCTATAATATATTCAGGAACTCCATTCCAGGTTTCTCTAGGCCAACTACTGCAGAACCTAAAGCAACCAATTTGGAACCTGAGAAAACTGTTGCGGTACCTGAGAAAACTGTTGTGGAACCTGAGAAAACTGTTGTGGAAGCAACTAATGTTGCTGAGACACTGTCCATGGAGCCAAAAATATGCTCAGCGACAGGTACAGGGTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATGTATCTGGCAGATGGTACATTGAGCTTAAAGAAGTAGCTTCAGAACTAGCATCAATTGGTTTCACTGTGGTCTGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGATACATGCCGAAGGATTTATATAATTTAAATTCCAGATATGGAAACATGGATGAACTCAAAGATTTGGTGAAAGAATTTCATGAAGTTGGGATCAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCACATTATCAGAATAAGAATGGTGTTTGGAACATATTTGGAGGGTATCTTGACTGGGATGATAGTGCAGTTGTTTCGGACGATCCACATTTTCAGGGTAGGGGCAACACGAGTAGTGGAGATAGTTTTCACGCTGCTCCAAACATTGATCATTCACAGGAGTTTGTGAGAAAAGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAATTGGATATGATGGATGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATAGAGGCAAGTGAACCTTATTTTTCTGTGGGAGAGTACTGGGATTCTCTCAGTTATACAAATGGTGAAACTGATCATAATCAAGATGCTCATAGGCAGAGAATAGTTGACTGGATCAATGCTACCAATGGTAACTCTAGTGCATTTGATGTTACAACAAAAGGGATTCTTCACACTGCACTGGAAAAGTGTGAATATTGGAGATTGTCAGATGTGAAGGGAAAGCCTCCAGGTGTTATTGGATGGTGGCCTTCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGTTCTACTCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGATAGGATATGCTTACATTCTTACTCACCCAGGAACTCCATCAGTCTTTTATGACCACATTTTCTCTCACTACAAAACTGAAATAGCAAGTCTGATATCTCTCAGAAAGAGGAACGGGATCCACTGCAGGAGTACAATTCAAATTAGCAAAGCAGAAAGGGATGTTTATGCAGCCATCATTGACGAAAAAGTTGCTGTGAAGATCGGACCAGGACATTTTAAGCCATCAAGTGGCTCCCTTAAATGGTCATTAGCTATTAAGGGAAAAGACTACGAAATTTGGGAAGCATCGCAACCATAG 2793 0.416 MSTVALEPFIHLCSRKPSFHSRKPISLRPFFLPTCSSNLNDASFIFHHQPRRTLSPVHAASVTDTPTLHPLQCPQTSTSTFAIDRTQMAKGKIFVRLDHGKDLKDWELTVGCNLPGKWILHWGVTLVQDVGREWDQPPLDMIPPGSVPIKDYAVETPLKKSSLSAEGDTLHEVRIGLRPKFGISAIHFVLKDEETGDWYKNESKDFVVSLVDCIKADSVINEPKRGFDFWPGNLGQLSRMFSKLKADENRSNESRVPEGENNKPEGFYEEVYVTKKILVSNSVSVSTKKCFESGAVKDILYFETDLPGDVVLHWGVCRDDSRRWEVPPPPHPPGTVPFKDRALRTQLLPRHDGKGSSAQITLEEEFSGLVFVIKQNENTWFKYSGNDFYVPLSSSSNLLNIGNKEDVSEGVQIEKPSQQNSFFAFTDTVAYEIRNLVTDNSSEKKQKRKSKKVQQSIFEEIERLAAEAYNIFRNSIPGFSRPTTAEPKATNLEPEKTVAVPEKTVVEPEKTVVEATNVAETLSMEPKICSATGTGYEILCQGFNWESHVSGRWYIELKEVASELASIGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNMDELKDLVKEFHEVGIKVLGDAVLNHRCAHYQNKNGVWNIFGGYLDWDDSAVVSDDPHFQGRGNTSSGDSFHAAPNIDHSQEFVRKDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYIEASEPYFSVGEYWDSLSYTNGETDHNQDAHRQRIVDWINATNGNSSAFDVTTKGILHTALEKCEYWRLSDVKGKPPGVIGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMIGYAYILTHPGTPSVFYDHIFSHYKTEIASLISLRKRNGIHCRSTIQISKAERDVYAAIIDEKVAVKIGPGHFKPSSGSLKWSLAIKGKDYEIWEASQP* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1260 930 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 79 928 - -
Vra11g1260 930 SMART aamy 537 866 IPR006047 GO:0005975
Vra11g1260 930 SMART alpha-amyl_c2 867 927 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vra11g1260 930 Gene3D - 871 927 IPR013780 -
Vra11g1260 930 PANTHER ALPHA-AMYLASE 79 928 - -
Vra11g1260 930 Pfam Alpha-amylase C-terminal beta-sheet domain 868 926 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vra11g1260 930 Gene3D Glycosidases 537 870 - -
Vra11g1260 930 SUPERFAMILY Glycosyl hydrolase domain 871 926 - -
Vra11g1260 930 CDD AmyAc_arch_bac_plant_AmyA 538 877 - -
Vra11g1260 930 SUPERFAMILY (Trans)glycosidases 535 854 IPR017853 -
Vra11g1260 930 Pfam Alpha amylase, catalytic domain 564 847 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1260 Vra-Chr11 15029681 15036626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1260 1 928 Glycoside Hydrolase AT1G69830 57.218 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1260 K01176 - gmx:100810333 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1260 11 15029681 15036626 Vra11g1260 11 15029681 15036626 ECH