Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1250 ATGATTAAACCAAATACCCTTTTCACGTTCACCTCTTTTTTTCAACCCCTTCCATCTTTCCCTTTCTCCTGGGACTGCGCCTTCAATTACAAACCACAAGTCTCCCTTTTAGGTTCTTCTTGCTCTTTTCTTTGCCCCAGATTGTGGCTTGTGAGCATGTCGACTCCTGCAAGAAAGAGGCTCATGAGGGATTTTAAAAGAGTGCAACAAGATCCTCCAGCTGGCATCAGTGGGGCTCCCCATGAGAATAATATTATGCTTTGGAATGCAGTTATATTTGGACCAGATGACACCCCTTGGGATGGAGGAACATTTAAGTTAACACTTCAGTTCACAGAGGAATATCCTAATAAACCACCTGTGGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACATTTATGCAGATGGAAGCATATGTTTGGACATTTTGCAAAATCAATGGAGTCCAATTTATGATGTAGCTGCAATACTTACCTCAATTCAGTCTTTGCTTTGTGATCCAAACCCAAATTCTCCAGCAAATTCAGAAGCTGCAAGGATGTTTAGTGAAAACAAACGTGAATACAACAGAAGAGTACGAGATATTGTTGAGCAGAGTTGGAGTGCTGATTAG 615 0.4114 MIKPNTLFTFTSFFQPLPSFPFSWDCAFNYKPQVSLLGSSCSFLCPRLWLVSMSTPARKRLMRDFKRVQQDPPAGISGAPHENNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEEYPNKPPVVRFVSQMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRDIVEQSWSAD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1250 204 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 129 144 IPR023313 -
Vra11g1250 204 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 56 202 IPR000608 -
Vra11g1250 204 SUPERFAMILY UBC-like 50 202 IPR016135 -
Vra11g1250 204 Pfam Ubiquitin-conjugating enzyme 60 196 IPR000608 -
Vra11g1250 204 SMART ubc_7 59 202 - -
Vra11g1250 204 Gene3D Ubiquitin Conjugating Enzyme 51 200 IPR016135 -
Vra11g1250 204 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 43 204 - -
Vra11g1250 204 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 43 204 - -
Vra11g1250 204 CDD UBCc 59 197 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1250 Vra-Chr11 14897351 14900135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1250 59 172 Miscellaneous Gene Families AT1G17280 31.092 1.77e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1250 K10573 - vvi:100261243 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1250 11 14897351 14900135 Vra11g1250 11 14897351 14900135 ECH