Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1214 ATGATGAACAACACTGCTATGATGAGATGCTCCAACACCAACGCCCTTTTCAGAGCTTTCAGAGCCAAAACCCGCGATTCTTCTCTGCCAATTTCTTCAATGCCCATCAACAAAGGTACTGGTGGGAAGAAGGCATATGATGCATTGCTCCTGGACGCTGGGGGCACCCTTTTGCAATTGGCAAAGCCAGTTGCGGACACTTATGCCGCTATTGGATCCAAATATGGTGTGATTATGGATCCAGCTATGATAAAGCAAGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCAGAAAAGCTACGGTACCAGGGAGATGGGAAGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACAGGTTGTGGAGATGAGAACTATTTTGAGGAAGTTTATGAGTACTATGCAAGAGGGGATGCGTGGCATCTTCCAGATGGAGCTCATGAAGCAATTACTCTTCTGAAGGATGCTGGAGTTAAGATGGCTGTTGTATCCAATTTTGACAACCGCTTAAGGAAGCTATTGAAGGATCTTAATGTCTTAAATCTATTTGATGCTGTTATTATATCATCAGAGGTCGGATATGAAAAACCAGATTCGAGAATATTCCAAGCTGCTCTAGATCAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATAAAAAAGCAGATAAAATGGGGGCCAATAACGTGGGGATCGATTGCTGGTTATGGGGTATTGATGTGAAGACATTCTCCGATATACAAAATCGCATTCTCAATACAGAGGCTTAA 777 0.4311 MMNNTAMMRCSNTNALFRAFRAKTRDSSLPISSMPINKGTGGKKAYDALLLDAGGTLLQLAKPVADTYAAIGSKYGVIMDPAMIKQGFKRAFAAPWPEKLRYQGDGKPFWKLVVSEATGCGDENYFEEVYEYYARGDAWHLPDGAHEAITLLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDSRIFQAALDQVNVEACKALHIGDDKKADKMGANNVGIDCWLWGIDVKTFSDIQNRILNTEA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1214 258 PANTHER F14L17.7 PROTEIN 5 257 - -
Vra11g1214 258 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 49 238 IPR011949 -
Vra11g1214 258 Gene3D - 62 134 IPR044924 -
Vra11g1214 258 SUPERFAMILY HAD-like 46 239 IPR036412 -
Vra11g1214 258 SFLD Haloacid Dehalogenase 46 238 - -
Vra11g1214 258 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 46 238 - -
Vra11g1214 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 46 57 IPR006439 -
Vra11g1214 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 165 IPR006439 -
Vra11g1214 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 182 198 IPR006439 -
Vra11g1214 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 200 220 IPR006439 -
Vra11g1214 258 Pfam Haloacid dehalogenase-like hydrolase 123 236 IPR041492 -
Vra11g1214 258 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 149 233 IPR006439 -
Vra11g1214 258 CDD HAD_dREG-2_like 145 256 - -
Vra11g1214 258 Gene3D - 50 238 IPR023214 -
Vra11g1214 258 PANTHER - 5 257 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1214 - - gmx:100306694 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1214 11 13179939 13187225 Vra11g1214 11 13179939 13187225 ECH