Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1194 ATGCCAAGCAAGGAGGATTCACCATTAAGAGAAGCAAATCTTCCACTTCTGCAACATCACTCTCTAACAGATGAAAGAGATGAGCAAGAGCAAAAACTGTTACCAAGGTTTTGGATCGAGTCGAAGAAGCTTTGGCACATAGTAGGCCCTTCAATTTTTAGCCGTGTTGCATCCTATTCCATGTTAGTCATCACTCAAGCCTTCGCTGGTCGTCTAGGTGACCTCGAACTCGGCGCCATCTCCATTGCCTATAATGTCGTTGTTGGCTTCGACATTGGCCTCTTGTTGGGCATGGCAAGTGCCTTGGAAACGCTATGTGGGCAAGCCTTTGGAGCAAAAAAGTACTACATGTTAGGCGTTTACTTGCAGCGTTCGTGGATCGTNCTTTTCATTTGCTGTATCTTGCTTTTGCCTCTGTACTTATTTGCCTCGCCGGTGNTGAAGCTGTTGGGGCANCCCGATGATCTGGCGGAGTTAACCGGTACGGTGTCGATGTGGTTGATACCGGTGCACTTCGCGTTTGCATTTCAGTTTCCTCTGCAGAGGTTCTTGCAGTGCCAGCTGAAGACTGCGCCTATTGCGTGGGTGTCTCTGGTGGCGCTCTTGGTGCATGTGTTTGTGAGCTGGTTGTTCGTGTTCAAGTTGGAGTTCGGAGTTATTGGCGCTGCTGCAACCATTAACTTCTCGTGGTGGGTACTCACGTTGGGGCTCTTTGGGTACAGTGTTTGGGGTGGCTGCCCTCATACTTGGGCTGGTTTTTCAGTTGAAGCTTTCTCTGGGCTTTGGGAGTTTGTAAAACTCTCTGCTGCTTCTGGAGTCATGCTCTGCTTGGAGAATTGGTATTACAAAATTCTGATAGTGATGACCGGGAACCTTGAGAATGCAGAGATTGCCGTCGATGCTTTATCCATATGTATGAGCATCAATAGCTTGGAGATGATGATTCCTCTGGCATTCTTTGCTGCAACAGGAGTGAGAGTTGCAAACGAGCTTGGAGCACGGAATGGAAAAGGAGCCAAGTTTGCTACTATAATATCTGTGGTGACATCTGTTATTATAGGATTCTTTTTCTCTATATTGATTTTGATATTGCATGATAAAATCGGCTATATATTCTCTAATAGCAAACCTGTTCTTGACGAAGTAAACAACCTTTCTCTTCTATTAGCCTTCACAATTTTGCTCAACAGTGTTCAACCAGTTCTCTCAGGAGTGGCTGTAGGGTCAGGTTGGCAATCATATGTTGCATACATAAACTTGGGTTGCTACTATATTATTGGTTTGCCTCTTGGAATTTTGATGGGGTGGGTCTTCAAACTAGGAGTTATGGGAATTTGGGCTGGGATGATTTTTGGTGGTACAGCTACTCAGACATTAATATTGAGCATCATTACCCTTCGGTGCGACTGGGAAAAGGAGGCTGAGAGTGCGAAATTGCGTATGACGAAGTGGGCAGATCCAAAACATGAACTAAACTAA 1479 0.4544 MPSKEDSPLREANLPLLQHHSLTDERDEQEQKLLPRFWIESKKLWHIVGPSIFSRVASYSMLVITQAFAGRLGDLELGAISIAYNVVVGFDIGLLLGMASALETLCGQAFGAKKYYMLGVYLQRSWIVLFICCILLLPLYLFASPVXKLLGXPDDLAELTGTVSMWLIPVHFAFAFQFPLQRFLQCQLKTAPIAWVSLVALLVHVFVSWLFVFKLEFGVIGAAATINFSWWVLTLGLFGYSVWGGCPHTWAGFSVEAFSGLWEFVKLSAASGVMLCLENWYYKILIVMTGNLENAEIAVDALSICMSINSLEMMIPLAFFAATGVRVANELGARNGKGAKFATIISVVTSVIIGFFFSILILILHDKIGYIFSNSKPVLDEVNNLSLLLAFTILLNSVQPVLSGVAVGSGWQSYVAYINLGCYYIIGLPLGILMGWVFKLGVMGIWAGMIFGGTATQTLILSIITLRCDWEKEAESAKLRMTKWADPKHELN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1194 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 478 - -
Vra11g1194 492 TIGRFAM matE: MATE efflux family protein 50 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g1194 492 Pfam MatE 50 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g1194 492 Pfam MatE 272 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g1194 492 CDD MATE_eukaryotic 40 475 IPR045069 GO:0042910|GO:1990961
Vra11g1194 492 PANTHER PROTEIN DETOXIFICATION 23 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1194 Vra-Chr11 12546726 12555600 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1194 K03327 - gmx:100796652 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1194 11 12546726 12555600 Vra11g1194 11 12546726 12555600 ECH