Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1118 ATGCAAGACCCCACCACTTCCGACGCCGATCACCGCAACTACCACGAAACCACACCGTCGTCTAAGCGCACGGTCGCCGTCAACCCCCACCGGTCCAAGCGTCCCGTCTTCAAGGTGCTCCCGGGGCAGATCGCGTTCCGCCTCGTGTGCCACGCCTCCATCGTGGGCGGTCTCATAGGGAGCTCCGGCTCTATCGTTTCCCAGCTCCGCCGCGAGACCGCCTGCAAAATCCACTGCGAGGACTCATCCGCCAGCGCCGAGGACCGCGTTATCCTCGTCATCGGCTCCCTCTCGCCCCTCAAGGGCCTCCAGCTCGGCGACGGCGAGGTCGACGTTTCCAACGCGCAGGAAGCCGTCGTTAGGGTTTTCGAGAGGGTTTGGGAGCTGGAGGCCGAGAAAGGCGTTAATTCTAACAGAGCCGTTAACGGCGAGGTCTTTTCCAAGTTGCTAGCTCACACTTCGCAGATTGGTGCTGTTGTTGGCAAAGGAGGGAAGAACATCACCGCCATTAGGAACAGTAGTGGTGCCAAAATTAGGGTTTGCCCTCCTCCGCATTGCGCCGCCAAAGACGAGGAGTTAGTTCAAATAACTGGTGGCCTTTTGGCTGTAAAGAAAGCGCTGATTGCTGTATCTCACTGTCTTCAAGATTGTCCCCCATTATCCAAAGTTTCTGTTTCTTCTAGTACACCCACTGTTAGCTCTTCTGATAGATCATCCTCTGATCACAATGCTGAACTTTTTCCTCACCTTAATTCATTGTTAACCTCCATGGAAGGTTTATCTGTATATGAACGGACCACAAACTCTAATGAAACCTCTGGCAGTGACTCAAAAGGAGCAGAGCACGAAGTTGTGTTCAGACTCCTTTGCTCTAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGCAAAACAGGTGCTTCTATTATCTTTACAGCTCCTTTAAGCGAGTCTGCCGAGCGCATTGTCACCATTTCTGCTGTAGAGAACCTTGAATCTTGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTCCCGGTATCTAGTATGGAATCACCTGTAACTGCAAGGCTGCTAGTTGCAGCAAGCACAGTAAACTGCTTCAGCAGCAATGAAGGTCAGGTGATTTCAGAATTGAGAGAACTAACTGGGGCTGATTTACAAATTTTGCATGGAGAGTCAATTCCTAGTGGCGCTTCAGATGGTGATGTGGTGGTACAGATCACTGGAAAGTACAGATGTGTACAAGATGCCTTGTACAAAATCACTTGTAGAATCAGAGATAATCTTTCGGCGGCGAATGGGGTGGTTGCTGAAGCAAGACCGAAATCCAATTGGAAAGTGAACAAGGAACCTGTAAAGGGTAAACCTTTTTTTGGCCGAGGAAAATCTGCTTATCCTTCTGGGAGGTTTCCGCGACGGAATGCAGGGTTGCATGCTAAAACAGTATCACAAAATGGAGACTTGCATACAGATTTAAGTGAGAATTTGGACCGTGGAAGAGGAAACATGTTTGCGACGGTGACAAATACTACTGTGGAGATAGTAGTTTCTGAACATGTCTTTGGTTCTGTTTATGGAGAAGATGGTGGCAATCTGGATCGAATAAGACAGATTTCAGGTGCAACTGTAACGGTTTATGATCCATCGGTTGGTACAAGTGGAGGGAAAGTTGTGATATCTGGGACACCTGATCAAACCTTTGCAGCACAGAGCTTGCTTCAAGCTTTTATTCAAACGGGACAAGTAAGCTGA 1821 0.4854 MQDPTTSDADHRNYHETTPSSKRTVAVNPHRSKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSSASAEDRVILVIGSLSPLKGLQLGDGEVDVSNAQEAVVRVFERVWELEAEKGVNSNRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNSSGAKIRVCPPPHCAAKDEELVQITGGLLAVKKALIAVSHCLQDCPPLSKVSVSSSTPTVSSSDRSSSDHNAELFPHLNSLLTSMEGLSVYERTTNSNETSGSDSKGAEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFTAPLSESAERIVTISAVENLESCNSPAQDAVILVFARIIEDHIGKGFLPVSSMESPVTARLLVAASTVNCFSSNEGQVISELRELTGADLQILHGESIPSGASDGDVVVQITGKYRCVQDALYKITCRIRDNLSAANGVVAEARPKSNWKVNKEPVKGKPFFGRGKSAYPSGRFPRRNAGLHAKTVSQNGDLHTDLSENLDRGRGNMFATVTNTTVEIVVSEHVFGSVYGEDGGNLDRIRQISGATVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFIQTGQVS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1118 606 ProSiteProfiles Type-1 KH domain profile. 532 596 - -
Vra11g1118 606 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 532 601 IPR036612 GO:0003723
Vra11g1118 606 MobiDBLite consensus disorder prediction 221 242 - -
Vra11g1118 606 Pfam KH domain 47 96 IPR004088 GO:0003723
Vra11g1118 606 Pfam KH domain 286 335 IPR004088 GO:0003723
Vra11g1118 606 Pfam KH domain 149 210 IPR004088 GO:0003723
Vra11g1118 606 Pfam KH domain 534 597 IPR004088 GO:0003723
Vra11g1118 606 Pfam KH domain 379 444 IPR004088 GO:0003723
Vra11g1118 606 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 30 477 - -
Vra11g1118 606 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 279 335 IPR036612 GO:0003723
Vra11g1118 606 Gene3D - 282 453 - -
Vra11g1118 606 Gene3D K Homology domain, type 1 43 128 IPR036612 GO:0003723
Vra11g1118 606 Gene3D K Homology domain, type 1 147 217 IPR036612 GO:0003723
Vra11g1118 606 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 369 450 IPR036612 GO:0003723
Vra11g1118 606 CDD KH-I 534 597 - -
Vra11g1118 606 ProSiteProfiles Type-1 KH domain profile. 43 119 - -
Vra11g1118 606 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 36 97 IPR036612 GO:0003723
Vra11g1118 606 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 218 IPR036612 GO:0003723
Vra11g1118 606 MobiDBLite consensus disorder prediction 1 18 - -
Vra11g1118 606 Gene3D K Homology domain, type 1 529 603 IPR036612 GO:0003723
Vra11g1118 606 CDD PCBP_like_KH 46 101 - -
Vra11g1118 606 CDD PCBP_like_KH 285 354 - -
Vra11g1118 606 ProSiteProfiles Type-1 KH domain profile. 144 210 - -
Vra11g1118 606 SMART kh_6 143 215 IPR004087 GO:0003676
Vra11g1118 606 SMART kh_6 282 355 IPR004087 GO:0003676
Vra11g1118 606 SMART kh_6 42 124 IPR004087 GO:0003676
Vra11g1118 606 SMART kh_6 374 449 IPR004087 GO:0003676
Vra11g1118 606 SMART kh_6 531 601 IPR004087 GO:0003676
Vra11g1118 606 CDD PCBP_like_KH 148 211 - -
Vra11g1118 606 ProSiteProfiles Type-1 KH domain profile. 375 444 - -
Vra11g1118 606 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 30 477 - -
Vra11g1118 606 ProSiteProfiles Type-1 KH domain profile. 283 350 - -
Vra11g1118 606 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1118 Vra-Chr11 10802887 10808762 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1118 K21444 - gmx:100793130 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1118 11 10802887 10808762 Vra11g1118 11 10802887 10808762 ECH