Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1077 ATGTGTTTCTCACTCCCTTCACCCGCTAGGTCCGCAGAGGGGCCAATGGAGGATTCTCACGCTACTAATTTCGTTTCCGAAACTCTATGTCCCTCTGAATCGGTCGGCGATTGTCGCGATCATTCTGGTCGGTTATCGGCCGTCGGCGAATCTACTCTTCCGGTGGGTTACGGTGTTTGCGGCGAGGACTCTGCGCAAGAGAATTGTAATACGGACACGCAGTTCCGGCAGCTCAACAACGATTCGACTCTGCTGTTGACTTCTTGTTCACCCGTCTCGGCGGTGGCGCCGGAATCGTGGGTTACTACCCAAGGGACCTGGCTCTTAGATGAGAACGAGGGTTCAATGGGTGCAGAATCTGTCTATGCAATTGGGCCTTCTAACATGGGAGCAGGACTTTCGAATCTCGGCAATACGTGTTTTCTCAATGCTATACTGCAATGCTTTACACATACAGTGCCTCTAGTGCAGGGTATTCGTGCGTGTACTCATAATTTCCCTTGCGCTGGTCATATGGATCGCTTTTGTGTTATATGCACTTTTCGTGACCAGGTTGAACGCTCTTTGTCCGCATGTGGGCGGACTCTCTCACCTTTGAGATTCGTGAACAATTTGAGTTTTTTTTCTTCTGGATTTAGAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCTTTAGATAAACTGGAAAGGCGTTTCCTAGATTTGAAGAAGACTGATTTAAATTTTGAAGATGATAATCTTGTACAGAAAGTATTTGGTGGTCGTCTCATTAGCAAACTTCAATGTTGTAGCTGTGGTTGCACTTCTGACACTTATGAGCCGTTAATTGACATGAGTTTAGAGATAGAAAGTGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAAGATTGACGCAAACTTTAGATGCGATAGCTGCAAGGAAGATGTGTCCATGGAGAAGCAGCTTATGTTGGATATGACACCATCAATTGCAGCATTTCATTTAAAAAGGTTTAAGACAGATGGGATTTTTGTTGAGAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTTCTAATCAAAACAATGATGTACTGATGAAATATGATTTATATGCCATTGTTGTGCATACTGGATTTTCTTCTACTTCAGGGCATTACTTCTGCTTTATTCGCTCTGGTCCAGACACATGGCACAAGTTGGATGATTCAATGGTTACTGAGGTATCAGGAGACTCTGTACTGTCTCAGGAAGCATACATACTGTTTTATGCAAGACAGGGTACTCCATGGTTCTCTAGTATCATGGAATCTCGAAAGCAATGTTTGGATCCAAATATTTCAAGTACATCTCCTACGTCTGTTTTAGACGTTGGTGATGACATGTCTAAATCTAATCCCAGTTTAGTTCCAAGTACTGAAGAAGGTGGGGCTGGTGTATCCAAAGGATGTTCTGATCCTCCGTTTGATTATATTTGTCCAGACCAACTTGCTTTTTCTGAAACAAATGACACTAAAGATGCTACTCATGGCTGTGGACGATTTCTCTACGGGTCAAATCAGGAGAGCATTTCTTTCCATAGCAGCTCTAAAGATGTTGAAACCCAAAAGTTCAGAAACAGGGTGACCTTGGATGCTCGTTCCATGATTGATGGAAAATCTTATACTAAGAATGTTAGTGTTGATAATAACCATGATTGTGAGGAAGTTGTTGATTTTAGAGAGAGTGCCGGTGCTCCTTCACCATCTCCGCCTTCGCCTCCGCCCACCTCCCCTCTTGATGATGCTTCAGTTAAATTTCATATCTCACGTGATAAATCGAAGGAGAGTAAGCAGAGCCGTACAAGACCACTCCATCAGTGTAACGAGGATCTTCGACGACGAGAAGCTATGAAATATCTGAACAAGACTGGTTCAAGGAGAGCGGAACTTATGAAATATGTTCCAGATGGAGCTTCAAACAAGAGAAAAAAAGTGGATTCATTGCAGTATGCTTAG 2022 0.4318 MCFSLPSPARSAEGPMEDSHATNFVSETLCPSESVGDCRDHSGRLSAVGESTLPVGYGVCGEDSAQENCNTDTQFRQLNNDSTLLLTSCSPVSAVAPESWVTTQGTWLLDENEGSMGAESVYAIGPSNMGAGLSNLGNTCFLNAILQCFTHTVPLVQGIRACTHNFPCAGHMDRFCVICTFRDQVERSLSACGRTLSPLRFVNNLSFFSSGFRRYQQEDAHEFMQCALDKLERRFLDLKKTDLNFEDDNLVQKVFGGRLISKLQCCSCGCTSDTYEPLIDMSLEIESVDSLPSALESFTKVEKIDANFRCDSCKEDVSMEKQLMLDMTPSIAAFHLKRFKTDGIFVEKIDKHIDFPLELDLQPYTISNQNNDVLMKYDLYAIVVHTGFSSTSGHYFCFIRSGPDTWHKLDDSMVTEVSGDSVLSQEAYILFYARQGTPWFSSIMESRKQCLDPNISSTSPTSVLDVGDDMSKSNPSLVPSTEEGGAGVSKGCSDPPFDYICPDQLAFSETNDTKDATHGCGRFLYGSNQESISFHSSSKDVETQKFRNRVTLDARSMIDGKSYTKNVSVDNNHDCEEVVDFRESAGAPSPSPPSPPPTSPLDDASVKFHISRDKSKESKQSRTRPLHQCNEDLRRREAMKYLNKTGSRRAELMKYVPDGASNKRKKVDSLQYA* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1077 673 MobiDBLite consensus disorder prediction 459 489 - -
Vra11g1077 673 Pfam Ubiquitin carboxyl-terminal hydrolase 132 432 IPR001394 GO:0004843|GO:0016579
Vra11g1077 673 SUPERFAMILY Cysteine proteinases 129 434 IPR038765 -
Vra11g1077 673 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 132 147 IPR018200 GO:0004843|GO:0006511
Vra11g1077 673 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 123 474 - -
Vra11g1077 673 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 131 435 IPR028889 -
Vra11g1077 673 MobiDBLite consensus disorder prediction 581 673 - -
Vra11g1077 673 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 377 395 IPR018200 GO:0004843|GO:0006511
Vra11g1077 673 Gene3D Cysteine proteinases 128 437 - -
Vra11g1077 673 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 123 474 - -
Vra11g1077 673 MobiDBLite consensus disorder prediction 459 480 - -
Vra11g1077 673 MobiDBLite consensus disorder prediction 606 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1077 Vra-Chr11 10063718 10068383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1077 132 434 Miscellaneous Gene Families AT2G24640 34.824 3.05e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1077 K11855 - gmx:100808015 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1077 11 10063718 10068383 Vra11g1077 11 10063718 10068383 ECH