Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1057 ATGTCGTTAACATGCGTTCGTGGATGTGGTTTGCTTCGCCGCCAACGCCAGTGCTTCAGTTTTGTTTCTTCCTCTGCTTCTTCTGCACTGATGATGGAAGACCACGTGTTTGATGAAAGTCCCAAGTCTTATGCTAGTTTTGTGCTTGACAGGCCTGTGCTCCAAGTTCCCGCAACAAGGAGGCGTTACTTTCCTTTAGTGTCCAGGGTGCTCAAATCACTGAGTTGGAGGGTGGCTAGAGAAGTAAGGTTTTGGAGTTGGGTTGACAGTCATGGGTTTCCTCATTCAATAAATTGTTTTAGGATTATGGTTCATGCGTTTGCTTTGGCCGGGATGCGTTTGGAAGTGTTTGCTTTGCTTCGAGATGTTGTTGAGTTCTGTAACGAGGCCAACTACAACACCTTTGAATTGTTTTCAGCTTTGCTGGATTCACCCCATCATGTTGAAAGATCTGGCGTAGTATTTGAAGTGCTTATGAAAGTGTTTGCATCCAACTCTATGTTGGAAAATTCTCTTAGTGTCTTTGTGAATGCTAAGAATGTTGGACTTGAGCCTCATATAAGGACATGCAATTTCTTGTTGAAATGTTTGGTTGAAGCGAATAGAGCGAAGTGTGTTAGATGGTTTTTTGAGGAATTGAAGGACCGTGGTCCATCGCCAAATATCCACACCTATACAATCATGATGAACTTTTATTGTAGTAATGCTGGGTGTGATTCAGATATGAGACAGGCTGCTGCGATTCTAGGGAAAATATATCAGATTGGGGAAAAACCAACTGTTGTCACGTATAGTACTTATATTCATGGACTTTGTAAAGTTGGTTGTGTTGAGGCAGCGCTGATGTTAATTCGCAATTTGAACAAACAAAATCAGCCTCTCAACAGTCATTATTTTAATTCTGTAATTTATGGGCTTTGTAAAGTTGGTTGTGTTGAGGCAGCGCTGATGTTAATTCGCAATTTGAACATACAAAATCAGCCTCTTAACAGTCATTATTTTAATTCTGTAATTTATGGGCTTTGTAAAAGAAGTGACGTGGGTGAGGCTTTGCAAGTTTTTGTAGAAATGAAGAGGTCTGGGATATTACCAGATGTTTATAGCTACAGCATATTAATTGATACGTTCTGCAAGAAAGGGGACCTAATAAAATCTTTTGACCTGTTGGATGAAATGCAACGCTCCCAGGTAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGCAAGAACAATCGGTCACAGCATGCAGTGGAAATATTCCGCAGAACTGTTGCTTCTAGTTTCAAATATGATCAGATTATTTATGAAACTTTAATTGATGGATTTTGCACGCAAGGTGATGTGGATTCAGCCTTCAAGCTTTTAAAGAAGATGACCTGCTATAATTGGATTCCTTCTGCTTCTAGTTACCGCAGTCTAATTAAGGGATACTACAAACTAGGACTATTCGATCAGGCATTGGATGTTTTTGAAACCATGCTACGAAATGGTATTTGGCCAGATACTACCGCATGCAATTATATTCTTGATATATATTTTAGGGCAGGTTACTTCAACGTAGCCTTGACGCTGTTGAAGGACTTCGAAGAACATGGATGTAACCTCAACCAACATTCATATAATGCAATCATCTGTAAACTTTGTAAAGAAGGTTGCCCAGAAAGAGCATTGGAGCTCCTGCCTAGAATGCTTAAAAGGAATGTACCTCCGGCATTTGTTAATTATAGAACTCTTATATCTGGCTTTGCCGAACAGTCAAATATAAAAAGGGCTGTGAAGTTATTCACCAGAATGAAAGAAGTAGGGATCACTTTCAACATTGCCAGATATACAATTCTTATGAGTATATTTAGTCATAGTGGCAGCATGCAAGAAGCATATGACATTTTTAAGGAAATGAAAGAAAGGGGTTTGCATCCAGATCAGATTTCATATGCAACTTTAATAGCTGGCTTTTGTAATATTAGAGAATGGAAAAAGGCCTGGGCATTATTTGTAGAAATGAAGAGGGTAGGCATAATGCCAAATGTATTTACTTATACTTGCATGATTGATGGATTTTGCAAGTCAAACCGGATATATTTTGCCACCTCGCTGTTTCATGAAATGAACAGATATTCAGTTATTCCTGATGTTGCAACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGGGACATTGGCCAAGCACAGAAGCTATATGATGAAATGAAGGAAAAGGGTGTTTTGCCAGATGATATAATTCATAATATTCTAGGTCTGAAGGCATGTAAAGTTCAAGAAGGTTAG 2304 0.3928 MSLTCVRGCGLLRRQRQCFSFVSSSASSALMMEDHVFDESPKSYASFVLDRPVLQVPATRRRYFPLVSRVLKSLSWRVAREVRFWSWVDSHGFPHSINCFRIMVHAFALAGMRLEVFALLRDVVEFCNEANYNTFELFSALLDSPHHVERSGVVFEVLMKVFASNSMLENSLSVFVNAKNVGLEPHIRTCNFLLKCLVEANRAKCVRWFFEELKDRGPSPNIHTYTIMMNFYCSNAGCDSDMRQAAAILGKIYQIGEKPTVVTYSTYIHGLCKVGCVEAALMLIRNLNKQNQPLNSHYFNSVIYGLCKVGCVEAALMLIRNLNIQNQPLNSHYFNSVIYGLCKRSDVGEALQVFVEMKRSGILPDVYSYSILIDTFCKKGDLIKSFDLLDEMQRSQVKPSIVSYTSLIHGLCKNNRSQHAVEIFRRTVASSFKYDQIIYETLIDGFCTQGDVDSAFKLLKKMTCYNWIPSASSYRSLIKGYYKLGLFDQALDVFETMLRNGIWPDTTACNYILDIYFRAGYFNVALTLLKDFEEHGCNLNQHSYNAIICKLCKEGCPERALELLPRMLKRNVPPAFVNYRTLISGFAEQSNIKRAVKLFTRMKEVGITFNIARYTILMSIFSHSGSMQEAYDIFKEMKERGLHPDQISYATLIAGFCNIREWKKAWALFVEMKRVGIMPNVFTYTCMIDGFCKSNRIYFATSLFHEMNRYSVIPDVATYTVLIAWYHKHGDIGQAQKLYDEMKEKGVLPDDIIHNILGLKACKVQEG* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1057 767 Pfam PPR repeat family 330 378 IPR002885 -
Vra11g1057 767 Pfam PPR repeat family 644 693 IPR002885 -
Vra11g1057 767 Pfam PPR repeat family 186 234 IPR002885 -
Vra11g1057 767 Pfam PPR repeat family 259 308 IPR002885 -
Vra11g1057 767 Pfam PPR repeat family 436 483 IPR002885 -
Vra11g1057 767 Pfam PPR repeat family 714 757 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 554 660 IPR011990 GO:0005515
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 661 766 IPR011990 GO:0005515
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 446 553 IPR011990 GO:0005515
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 325 431 IPR011990 GO:0005515
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 238 324 IPR011990 GO:0005515
Vra11g1057 767 SUPERFAMILY HCP-like 440 644 - -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Vra11g1057 767 Gene3D Tetratricopeptide repeat domain 70 237 IPR011990 GO:0005515
Vra11g1057 767 Pfam PPR repeat 397 425 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Vra11g1057 767 Pfam Pentatricopeptide repeat domain 493 548 IPR002885 -
Vra11g1057 767 Pfam Pentatricopeptide repeat domain 565 621 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 647 681 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 262 286 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 614 645 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 542 574 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 473 505 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 718 750 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 579 610 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 682 716 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Vra11g1057 767 TIGRFAM PPR: pentatricopeptide repeat domain 438 470 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Vra11g1057 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vra11g1057 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 303 755 - -
Vra11g1057 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 308 - -
Vra11g1057 767 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 303 755 - -
Vra11g1057 767 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 9 308 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1057 464 766 Glycosyltransferase AT1G05670 31.683 3.53e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1057 - - vra:106776742 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1057 11 9749720 9762968 Vra11g1057 11 9749720 9762968 ECH