Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1033 ATGGCTTCTAAATTCAAGCATGGATCCTCCATGGTTCGGAATATCACGCAGCTGAGCAATGATTTGGATCAGGAAGGTGAAAATGGGAGTGTTGGCCTTGCTACCTACACGGTTCATATTCCTCCAACGCCTGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCGAGTTCTCGGAGAGCGGAGGATCAATACGCTTCTAGTTCTTTGTTCACCGGCGGTTTTAACCAGGTCACACGTGCCCATTTGAAGGACAAGGTGATTGAGTCTGAATCCAGCCACCCCCAGATGGCTGGTGCAAAAGGGTCCGCTTGTGCAGTGCCTGGGTGTGATGGAAAGGTCATGACTGACGAAAGAGGGTTGGATGTAGTCCCTTGTGAGTGCGGTTACAAGATTTGTAGGGATTGTTACAGAGATGCTTTGAGGGCTGGTGAGGGGATCTGCCCTGGTTGCAAGGAGCCTTACAATGAGCCTGAGGTGAAATCACAGACACTGCCTTTGCCTCCTGGTGCTGGGGTTAATAAGATGGAGAGGAGGTTGTCGTTGATGAAATCAGGGGCGTTGACGAGGAGCCAGACTAATGAGTTTGATCATGCTCAGTGGTTGTTTGAAAGCAAGGGGAGTTATGGATATGGGAATGCTATGTGGCCTAAAGAGTCTGAACCTGATGCCGATACTGCTTCTGATTGGATGGAGGGTGATCCGAATGTATTCAATGAAAAGCAGTGGAAGCCCTTGACCCGGAAGTTGAGTATCTCTGCTGCAATTCTCAGTCCTTATCGGCTCATGATATTTGTTCGGCTAGTGATTCTAGTTTTCTTTCTAAAGTGGAGGGTCCAAAACCCCAATGATGATGCAGTCTGGCTGTGGGGCATGTCAGTGGTATGTGAAATCTGGTTTGCCTTCTCCTGGGTGCTTGACCAGTTTCCTAAGCTCTTCCCCGTAAATCGTGTTGCCGATCTTGATGTTTTGAAAGAGAAGTTTGAAACTCCTAATCCCGCCAATCCCACTGGGAAGTCTGATCTTCCGGGAATAGACATGTTTGTGTCAACTGCTGATCCAGAAAAAGAACCACCACTTGTTACTGCCAATACCATTCTTTCCATTCTAGCTGCTGATTATCCTGTTGAGAAACTCTCATGCTATGTCTCTGATGATGGTGGTGCGCTCCTAACTTTTGAGGCCATGGCAGAGGCTGCAAGTTTTGCCAACTTGTGGGTTCCTTTTTGCCGGAAGCATGACATTGAACCCAGGAACCCAGAATCTTATTTTAATCTCAAGAGAGACCCTTACAAGAACAAAGTACGCTCTGACTTTGTGAGGGACCGCAGACGAGTAAAGCGTGAGTACGATGAGTTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCAGGCGGCGCTCTGATGCTTATAATGCTAGTCAAGAAATGAAAGCCATGAGGAAACGGAGAGAGAATGGAAATGAAGAACCTTTGGAGAATTTGAAAATTCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCGGGGACTTGGACAAATGCTGCACCAGAGCATTCCAGGGGTGATCATGCCAGTATCATACAGGTAATGTTAAAACCCCCAAGTGATGAACCACTGACTGGCACAGCATCAGATTCAAATGCCTTGGATTTAACTGAAGTTGATATTCGTCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCCGGCTATGATCACAACAAAAAGGCTGGGGCCATGAATGCCTTAGTTCGAGCCTCAGCCGTAATGTCCAATGGCCCTTTCATTCTCAATCTTGATTGTGACCATTACATATATAATTCTCAGGCCTTGAGAGAAGGAATGTGCTTCATGATGGACCGTGGTGGAGACAGGCTCTGCTATGTCCAATTTCCTCAAAGGTTTGAAGGGATAGACCCCAATGATCGCTATGCCAATCACAACACTGTCTTCTTTGATGTCAATATGCGTGCTCTTGATGGAATTCAGGGTCCCGTGTATGTTGGCACAGGGTGCCTATTTCGAAGAACTGCTCTATATGGCTTTGATCCACCCCGGATCAAGGAAGAGACTGGTTGGTTTGGTAGAAAGAATAAGAAATCCTCAACAGTGGCATCTGTCTCTGAAGCTGGTGCTGAGGAACAGTCATTGAGGAATAATGACATTGAGGATGAAGAAATGGTCACTGCTCTTGTTCCCAAGAAATTTGGCAACTCCAGTCTTCTTGTTGATTCAATCAGGGTGGCTGAGTTCCAAGGGCTGCCCCTTGCTGATCATTCATCCATCAAATATGGTCGTCCACCTGGTGCTCTAACACTCCCTCGAGATCCTCTTGATGCTGCTACTGTTGCTGAGGCCATCAATGTGATCTCATGCTGGTATGAGGACAAGACTGAATGGGGCATTAGAATTGGATGGATTTACGGGTCAGTTACTGAAGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAGATCTATATATTGTGTGACAAAAAGAGATGCATTCCGTGGCACTGCCCCAATCAATCTCACAGACAGGCTTCACCAGGTTCTTCGGTGGGCAACAGGCTCAGTTGAGATCTTCTTTTCACGCAACAATGCTCTTTTGGCAAGCTCTAGATTGAAATTTCTGCAGCGGATTGCTTACCTAAATGTTGGAATCTACCCTTTCACTTCCATCTTCCTTATTGTGTATTGCTTCCTTCCTGCCCTTTCACTTTTCACTAACCAGTTCATTGTTCAAAGCCTTGATGTAAATTTCCTAGTTTACCTCTTGGGGATAACCTTGACCCTTGTCATCCTTGCTGTTTTGGAAATCAAGTGGTCTGGCATTGCGCTCGAAGAGTGGTGGAGGAATGAACAGTTCTGGTTGATTGGAGGCACCAGTGCTCATCTTGCTGCTGTGCTTCAGGGTCTGCTGAAGGTGATGGCTGGCATTGAGATTTCATTCACTTTAACATCAAAATCTGCTGGTGATGACGAAAATGACGAATACGCTGATCTCTATGTCCTCAAGTGGACATCTCTTATGATACCACCAATCACAATCATGATGGTTAATTTGATAGCCATTGCAGTTGCAGTTAGCAGAACAATATACAGTGAGGATCGTGAATGGAGCAGTTTGCTTGGAGGTGTGTTTTTCAGCTTTTGGGTTTTGGCTCATTTGTATCCCTTTGCAAAAGGGCTAATGGGTAGAAGGGGTAGGACACCCACCATTGTGTTCGTATGGTCTGGTCTAATATCAATCACTATCTCACTCCTTTGGGTTGCCATTGATCCTCCCTCTGGTACCACTCAAATTGGAGGGTCATTCCAATTCCCTTGA 3345 0.4604 MASKFKHGSSMVRNITQLSNDLDQEGENGSVGLATYTVHIPPTPDNQPMEISLERSSSRRAEDQYASSSLFTGGFNQVTRAHLKDKVIESESSHPQMAGAKGSACAVPGCDGKVMTDERGLDVVPCECGYKICRDCYRDALRAGEGICPGCKEPYNEPEVKSQTLPLPPGAGVNKMERRLSLMKSGALTRSQTNEFDHAQWLFESKGSYGYGNAMWPKESEPDADTASDWMEGDPNVFNEKQWKPLTRKLSISAAILSPYRLMIFVRLVILVFFLKWRVQNPNDDAVWLWGMSVVCEIWFAFSWVLDQFPKLFPVNRVADLDVLKEKFETPNPANPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSDAYNASQEMKAMRKRRENGNEEPLENLKIPKATWMADGTHWPGTWTNAAPEHSRGDHASIIQVMLKPPSDEPLTGTASDSNALDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPNDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRIKEETGWFGRKNKKSSTVASVSEAGAEEQSLRNNDIEDEEMVTALVPKKFGNSSLLVDSIRVAEFQGLPLADHSSIKYGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGIRIGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTNQFIVQSLDVNFLVYLLGITLTLVILAVLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVMAGIEISFTLTSKSAGDDENDEYADLYVLKWTSLMIPPITIMMVNLIAIAVAVSRTIYSEDREWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGTTQIGGSFQFP* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1033 1114 MobiDBLite consensus disorder prediction 468 490 - -
Vra11g1033 1114 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 48 1112 - -
Vra11g1033 1114 SUPERFAMILY RING/U-box 95 161 - -
Vra11g1033 1114 Pfam Cellulose synthase 345 1105 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra11g1033 1114 Pfam RING/Ubox like zinc-binding domain 107 156 - -
Vra11g1033 1114 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 544 699 IPR029044 -
Vra11g1033 1114 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 699 IPR029044 -
Vra11g1033 1114 MobiDBLite consensus disorder prediction 40 59 - -
Vra11g1033 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Vra11g1033 1114 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 48 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1033 Vra-Chr11 9395858 9400735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1033 13 1114 Glycosyltransferase AT3G03050 75.224 0.0 1754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1033 K20924 - gmx:100813900 2036.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1033 11 9395858 9400735 Vra11g1033 11 9395858 9400735 ECH