Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1005 ATGGCAACCCTTGCAGACATTGGTGTCTCAGCTACCTTCAACGTTCTCTCGGCCTTTGCTTTCTTGATGGCTTTTGCTCTGCTGAGAATCCAACCCATCAATGATAGGGTCTACTTTCCCAAGTGGTATCTCAGTGGAGGGAGAAGTAGTCCTAGGAGTTCTGAGAATTTTGTGGGCAAGTTTGTGAACCTCAATTTCAAGACTTACCTTACCTTCCTGAATTGGATGCCACAGGCTCTCAGAATGAGTGAGTCTGAGATTATTAGCCATGCTGGCCTTGACTCTGCTGCTTTCCTTAGAATCTACACTCTGGGCTTGAAGATTTTTGTTCCAATCACAGTCGTGGCGCTCCTCATTCTTATACCAGTCAACGTATCAAGTGGAACGTTATTTTTCCTGCAGAAGGAATTGGTAGTGAGTGATATTGATAAACTCTCAATATCAAATGTTCCTGCTGAATCTATAAGATTTTTTGTTCACATAGCATTGGAATACCTATTCACATTATGGATTTGTTTTCTGCTGTACAAAGAATATGATTATGTCGCAACAATGAGATTGCATTTCATGGCATCACAACGCAGGCGTGTGGAGCAATTCACAGTAGTTGTCAGGAATATCCCTCACATGCCTGGTCACGCAGTATCAGATTCCGTGGAGGGCTTCTTTAAATTAAACCACCCAGATCATTATATTGGACACCAGGCTGTCTACAATGCAAACAAATTTGCTAAACTTGCAAAAAGAAGAGAAAGACTCCAAAATTGGCTGGACTATTACCAGCTTAAGTCTGAGAGACATCCTGGCAAGGGTTCCACTGTCAAGACTGGACTTTTTGGTCTTTGGGGTCGAAAAGTTGATGCTGTTGAGTACTACACACATGCAATTAAGGAACTTGATAACCTGATGACATTGGAACGCCAGAAAATTATAAAAGATCCCAAAGCTATTTTACCAGTTGCATTTCTTTCATTCAATTCCCGTTGGGGAGCATCAGTTTGTGCACAAACCCAACAAAGCAAGAATCCAACACTTTGGCTAACCGATTGGGCTCCAGAGCCACGTGATGTATACTGGCGGAACTTGGCCATACCATTTGTTTCTTTAAGCATCAGGAGGCTTGTAATATCATTGTCTGTGTTTGCCTTGGTATTCTTCTACATGATTCCTATTGCTTTTGTGCAATCCCTTGCCAATTTGGAAGGTCTTGAAAAAGTTGCTCCTTTCCTCAGACCAGTTATAGAATTCAATTTCATCAAGTCCTTTCTACAAGGTTTTCTTCCTGGTTTGGCTCTTAAAATATTTTTGTACATTCTACCGACAGTTCTGATGATCATGTCAAAAATTGAGGGATATATTGCACTGTCAACACTTGAGCGGAAGACAGCTGCAAAATATTATTACTTTATGCTGGTGAATGTTTTCTTGGGAAGCATAGTCACTGGTACTGCATTTCAACAACTGCATGCTTTCCTGCACCAGCCACCTACACAGATTCCTAGAACAATTGGTGTTTCCATTCCAATGAAGGCTTCCTTCTTTATAACATACATAATGGTTGATGGCTGGGCTGGAATTGCTGGTGAGATTCTAAGATTAAAGCCATTGGTTATATACCATCTCAAGAACATGTTCATAGTTAAAACAGAAAGAGATAGAGGAAAGGCCATGAACCCTGGGAGTGTGGACTTTCCAGAGACTATTCCAAGTCTTCAACTATACTTCCTTCTTGGAATTGTGTACGCTGTGGTGACACCAATCCTTCTTCCCTTCATACTAGTCTTCTTTGCTTTTGCATATTTGGTTTATCGTCATCAGATAATCAATGTCTACAACCAACAGTATGAAAGTGCTGCTGCATTTTGGCCACTAGTTCACAGCCGCATCATTGCAAGCATGCTAATATCCCAGTTTCTTCTATTGGGATTGCTTAGCACCAAAAAGGCAGCTAAATCCACACCTTTGCTTGTTATATTACCAATATTGACATTTGCATTCCACAAGTATTGCCAGAGACGTTTTGAGCCAGCATTTCGGAAGTACCCTATTGAGGAAGCAATGTCAAAGGATATGTTAGAGAAGAGCACAGAACCTGACTTGAACATAAAGGCTTATTTAGCCGATGCTTACTTGCATCCAATCTTCACGTCATTTGAGGTTGAAGAAGAAGAATTGATTGAAGTCAGAGTAGATAAACATCAAACTAATGTTGCTGCTGCTAGTTCTCCATCGAGTGAGCCTAGTTCACCCTCCCCACCCCATCATCTGCATCAATCATTCCCAGCCCATCATCTGCATCTACCATCACCACCCCATCATTTGCATGAACCATCCCCACCCGATCATTTGCATCTACCATCACAACCACCCCATCATTTGCCTGAATCATCATCACTACCCCATCATTTGCCTGAACCCTCCCTACCTCATCATTTGCCTGAACTATCCCCACCCCATCATCATTTACATGAACCCTCCCTACCCTATCATATCCATCAACCCTCTCCACCACCTCCATACAATGAGTATCCGCCAGGTTATTACTACCAATACCATCCTCCATCTCCTCCTCATCATGTTTATCAGTACTAA 2592 0.4194 MATLADIGVSATFNVLSAFAFLMAFALLRIQPINDRVYFPKWYLSGGRSSPRSSENFVGKFVNLNFKTYLTFLNWMPQALRMSESEIISHAGLDSAAFLRIYTLGLKIFVPITVVALLILIPVNVSSGTLFFLQKELVVSDIDKLSISNVPAESIRFFVHIALEYLFTLWICFLLYKEYDYVATMRLHFMASQRRRVEQFTVVVRNIPHMPGHAVSDSVEGFFKLNHPDHYIGHQAVYNANKFAKLAKRRERLQNWLDYYQLKSERHPGKGSTVKTGLFGLWGRKVDAVEYYTHAIKELDNLMTLERQKIIKDPKAILPVAFLSFNSRWGASVCAQTQQSKNPTLWLTDWAPEPRDVYWRNLAIPFVSLSIRRLVISLSVFALVFFYMIPIAFVQSLANLEGLEKVAPFLRPVIEFNFIKSFLQGFLPGLALKIFLYILPTVLMIMSKIEGYIALSTLERKTAAKYYYFMLVNVFLGSIVTGTAFQQLHAFLHQPPTQIPRTIGVSIPMKASFFITYIMVDGWAGIAGEILRLKPLVIYHLKNMFIVKTERDRGKAMNPGSVDFPETIPSLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNQQYESAAAFWPLVHSRIIASMLISQFLLLGLLSTKKAAKSTPLLVILPILTFAFHKYCQRRFEPAFRKYPIEEAMSKDMLEKSTEPDLNIKAYLADAYLHPIFTSFEVEEEELIEVRVDKHQTNVAAASSPSSEPSSPSPPHHLHQSFPAHHLHLPSPPHHLHEPSPPDHLHLPSQPPHHLPESSSLPHHLPEPSLPHHLPELSPPHHHLHEPSLPYHIHQPSPPPPYNEYPPGYYYQYHPPSPPHHVYQY* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1005 863 Pfam Late exocytosis, associated with Golgi transport 7 178 IPR032880 -
Vra11g1005 863 Pfam Calcium-dependent channel, 7TM region, putative phosphate 372 644 IPR003864 GO:0016020
Vra11g1005 863 Pfam Cytosolic domain of 10TM putative phosphate transporter 199 361 IPR027815 -
Vra11g1005 863 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 756 IPR045122 GO:0005227
Vra11g1005 863 MobiDBLite consensus disorder prediction 736 755 - -
Vra11g1005 863 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 756 - -
Vra11g1005 863 MobiDBLite consensus disorder prediction 736 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1005 Vra-Chr11 8950332 8957230 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1005 K21989 - gmx:100820282 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1005 11 8950332 8957230 Vra11g1005 11 8950332 8957230 ECH