Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0931 ATGAGTATGCCAAGGTTTGGGCGTCCGAAGAATCATGGTGAGTTGAGTTCGAACCTTTACGTGGCCAATTGTGGGCCCGCAGTGGGGATTTCTGATGATGACATTGCATCTGTGTTCTGCAAATTTGGAGAGCTTAAGGGAGTTTATGCAGCAGATGAGAGTGGGACACGTGTCATTGTGGCCTATGCTGAAGAAGGCTCTGCACAAGCTGCCTTGGAGGCATTACATGGACGCCCATGTCCTGAACTTGGAGGTCGATCCATGCATATCCGTTATTCCGTGCTTCAGCCAATAATACAGGATCAAGCTAGTGACTTGGTTCCTGTATCTATCTTTGCATCAGAAGTGAGCATTCCAGGCCTTTACCTAATTCATGACTTCATTAGTGCTAAAGAAGAAGAGGAACTGCTTCAGGCTGTTGACTGCAGGCCCTGGAACAGTCTTGCAAAAAGAAGGGTTCAACACTACGGTTATGAGTTTCGTTATGATACTAGGAACGTTAATACAAGGCATTGCTTAGGTGAACTTCCGTCATTTGTTTCTCCAATACTAGAAAGAATTTCATCATGTCCAAGTTTCAAGAATATTAAAAATATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAGTGGGTCTGTCCCCTCATATAGACACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCCTGTATAATGGAGTTCAGGCGGTATGAAAATGGAGATTGGCTTCCTAAAGTTGCCTCAAGTTCTATTGCAAAAACAGAAAATACTGAAGATCAATCAACTTTTAAAAGGAGAGCTATCTATCTTCCTCCTCGGTCTTTACTACTCTTGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACATCACAAGATAGATAAAGTTAATGGCAATGTCATTAGAAGGGCTTCAAGAAGAGTATCTTTTACATTTCGTAAGATATTCCACACAAGAGTATTCCATTTTCAGTGGTAA 1008 0.4196 MSMPRFGRPKNHGELSSNLYVANCGPAVGISDDDIASVFCKFGELKGVYAADESGTRVIVAYAEEGSAQAALEALHGRPCPELGGRSMHIRYSVLQPIIQDQASDLVPVSIFASEVSIPGLYLIHDFISAKEEEELLQAVDCRPWNSLAKRRVQHYGYEFRYDTRNVNTRHCLGELPSFVSPILERISSCPSFKNIKNIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRRYENGDWLPKVASSSIAKTENTEDQSTFKRRAIYLPPRSLLLLSGEARYAWHHYIPHHKIDKVNGNVIRRASRRVSFTFRKIFHTRVFHFQW* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0931 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Vra11g0931 335 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Vra11g0931 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 326 IPR005123 -
Vra11g0931 335 SMART rrm1_1 18 91 IPR000504 GO:0003723
Vra11g0931 335 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKBH8 HOMOLOG 16 326 - -
Vra11g0931 335 Gene3D - 112 329 IPR037151 -
Vra11g0931 335 Pfam 2OG-Fe(II) oxygenase superfamily 154 323 IPR027450 -
Vra11g0931 335 SUPERFAMILY Clavaminate synthase-like 118 325 - -
Vra11g0931 335 Gene3D - 7 106 IPR012677 -
Vra11g0931 335 PANTHER UNCHARACTERIZED 16 326 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0931 K10770 - gmx:100777529 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0931 11 8085119 8090635 Vra11g0931 11 8085119 8090635 ECH