Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0920 ATGGCGAGTGATTTTGGCGCGAACGGTCCTTCAACTTCTCCGTCAAATTCCGCGGAGTCCTTCATTGGCTGCTTCATAAGCTTGATTTCGAAGTGCGAGATTCGCTACGAGGGCGTTCTCTATCTCCTTGACGTCCAGGATTCCACCATCGGCTTGAAGAACGTTAAATCTTATGGAACGGAGGGGAGAAGAAAAGATGGCACACAAATTCCTCCAAGTGATAAGGTTTATGAATACATTCTTTTCCGTGGAAGTGACATTAAGAATTTGAAGATCAAGTCACCCTCCACTTCTTCTAAATCAGAAGAGCAGGTTCTTAGTGATCCAGCTATTATTCAGTCACGATATTCTGGGTCCCCAAGTTCCCCTGTGGCCTCAGTTGGTGGTAGAAATTTGACAGAATCAATCCAAAGGCAAGATACCCCTGAGATATCTAGTAAACCCTTTCCTGTTGGGTTGCCTTCTTATCAGTTGGTAACTGAACTGGGACCTTCAAATTCATCTGTTGCTACTCAAGTTGCCAGTCATCCATCTTTTTCTTCAGCAATGAGTTGGCAAGGGCCTAGTGATGTATCTAGCAGTGGTTCTAATTCTCTGCTACAATCTAGTTCCCTTTACTCCCCATCAATGGCAGCATCTGTAGTTGTGCAGAATCAGATTAAAAATGAAGAAACTCAGTTACCTACGAAGGGGGGATGGACAAGTTTTTCAGAGCGTGGTCTACCTATGTCTTCTGCCATGACTTCTTCTCTTGTTAATCTGACTCATTTGCATTCTCTTACCTCTTTAAAAAATTCTGATTCTCTTGATATTCCATCCCTTACGATACCTGTGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCCCAGTTTTCTTCACCTTATCAAGACATCTGTGCAGATCCAAGGCCAATTCATCCTCGACATTCTGCTCCTTCATTTGTAGATTCTACTTCAGGTCTCTTGCCAACGACACCATTTTTGTTAACTCCAGATCAATTTGCAAATCCTAGAGAACAGTTATTATCTACTACACATAATTTGAACCCTAATCAAAAGGGTATGTGTTCTTTGACTCAAGCATCATTAGTGCCATTTCCAGCATCTCAGGCACCACTCCTTCCATTACCTACTTCCGTGCAAAAGCCTCAATACACAGCTCCACAATTCACTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAAGATGAAGTATGGGGCTCTCTTGGAAAGGCAACCACAAAAATAGAGGGAGTACAGGATAATCTCAATCCGGGTAACATGGAATATCATGGGATGGTACCAAACCATAAGTCAGCATACAAGAAAGATGACTTTTTTGACACAATTTCCTGTAACTCTTTGACCCGTGGATCAAGGAATGGACAAAATCGTTTCTCCGAGAGAATGAAACAGGATACAGAGACATTTGGCAATTTCCAGCAGAGGCATAATTTTAATTATGGTGCTGGACGGGGTGAGAATTTCAGGGGCTCATATAATTGGGGAGGAAGGGGTTATGGCTATGGTGGGAGAGGGCGTGGTCCAAACTTTCCTCTCTAG 1581 0.4269 MASDFGANGPSTSPSNSAESFIGCFISLISKCEIRYEGVLYLLDVQDSTIGLKNVKSYGTEGRRKDGTQIPPSDKVYEYILFRGSDIKNLKIKSPSTSSKSEEQVLSDPAIIQSRYSGSPSSPVASVGGRNLTESIQRQDTPEISSKPFPVGLPSYQLVTELGPSNSSVATQVASHPSFSSAMSWQGPSDVSSSGSNSLLQSSSLYSPSMAASVVVQNQIKNEETQLPTKGGWTSFSERGLPMSSAMTSSLVNLTHLHSLTSLKNSDSLDIPSLTIPVPYSASMTFDGSNMPQFSSPYQDICADPRPIHPRHSAPSFVDSTSGLLPTTPFLLTPDQFANPREQLLSTTHNLNPNQKGMCSLTQASLVPFPASQAPLLPLPTSVQKPQYTAPQFTEEFDFEAMNEKFRKDEVWGSLGKATTKIEGVQDNLNPGNMEYHGMVPNHKSAYKKDDFFDTISCNSLTRGSRNGQNRFSERMKQDTETFGNFQQRHNFNYGAGRGENFRGSYNWGGRGYGYGGRGRGPNFPL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0920 526 Gene3D - 12 97 - -
Vra11g0920 526 ProSiteProfiles DFDF domain profile. 385 421 IPR025762 -
Vra11g0920 526 ProSiteProfiles FFD box profile. 445 460 IPR025761 -
Vra11g0920 526 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Vra11g0920 526 SMART LSM14_2 15 116 IPR025609 -
Vra11g0920 526 PANTHER SCD6 PROTEIN-RELATED 16 519 - -
Vra11g0920 526 SMART FDF_2 391 487 IPR019050 -
Vra11g0920 526 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Vra11g0920 526 CDD LSm14_N 18 92 IPR025609 -
Vra11g0920 526 Pfam FDF domain 392 485 IPR019050 -
Vra11g0920 526 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 16 519 - -
Vra11g0920 526 ProSiteProfiles TFG box profile. 467 487 IPR025768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0920 Vra-Chr11 7944910 7951694 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0920 K18749 - gmx:102669894 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0920 11 7944910 7951694 Vra11g0920 11 7944910 7951694 ECH