Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0915 ATGCCACACAGAACTCTACGTGCGAGTGATATTCATTTTCAGCTTGTTGATTATATCAAACTGTCCCTCAGAAAGCCAAAAATTGTGAGTGCCACTGCTGCCCATTGTGCAGCATTAAAGTTAGGTGCTCTAGCTCACCTCCCAAACTCAACATCTCTACTCACTGTTTATTCTAGAGCTGGAGATTTTGCTTCCTCAAAGAGTTTGTTTGATGAGATTCCCAACAGAGATGTGATTGCTTGGAATGCTATGGTTGCAGCATCTCTTGAAAATAAGTGCTATAGAACAGTAATGGACTTCTTAGAGAAAATGATCAAGGCCGAAACTAGGTTTGATTCCACTACTCTATTGCTTATGGTGTCAGCTTCTTCACTGATGAAAAACTTTGACCAAGGACGGGCAATTCATTGTGTGAGTATAAAATATGGGATGCTAAAGCATATAGGTTTATGTAATGCTCTTATTGACATGTATGCTAAGTGTGGTGATCTAAGCTCTTCCGAGAGTGTATACCAAGAGATGGAAGGTAAAGATATCATTTCGTGGAATTCGATAATGAGAGCCAGTATTTACAATGGTGATCCAGTGAATGCATTGTATTACTTCAAAAGGGTGAGTTTTTCTGAAGAAACAGTAGACAGTGTCAGTCTATCTTGTGCCATTTCAGCATCTTCAAGTTTGGGAGAGCTGGCTCTTGGCCAGTCCATTCACGGGCTGGGAATCAAGCTAGGTTACAAGGACAGCTCGTACGTTTCAGTTTCCAACTCTCTCATTTCATTATATTCACAATGTGAAGACATCGAAGCTGCTGAAACAGTGTTCAGAGAAATAGCACTCAAAGATACTGTTTCCTGGAATGCAATGATGGAAGGATTTGCATCAAATGGAAAATTTAATGAAGTATTTGATCTTCTGGTTGAAATGCAAATAGTAGGGTCGTTCCCACCTGATGTGGTGACATTAACTACTATACTTCCACTTTGTGCGGAACTGATGCTCTACAGAGAAGGAAGAACCATCCATGGATTTGCAATTAGAAGACAGATGATTGTATCTCATCATGCTATGTTACGGAACAGCCTGATAGACATGTATTCAAAGTGCAACCTGGTGGAGAAAGCTGAGCTCTTGTTCAATTCTACCACAGAGAAGGACTCGGTCTCATGGAATATAATGATATCTTGCTATTCCCATAACAGGTATTCTGATGAAGCTCAAAAATTGTTCAGAGAGATGCTACGTTGTAGCCTAAACTGCAGCTCCTCGACCGTTTTTGCTATTCTTTCTTCTTGCGACTCCCTTAACAGTCTCCATTTTGGAAAATCAGTTCACTGCTGGCAGTTGAAATCTGGATTTTTGAACCACATTCTTTTAATAAATTCTCTCATGCATATGTACATCAATTGTGGATACTTAGCTGCCAGTTTTTCAATTTTGTATGAGAATTCTGCATTAGCAGATATAGCTTCATGGAACACACTGATTGTGGGTTGTGTGCGATGCGACCATATCAGAGAGGCTCTAGATATTTTCAAGTTGATGAGACAGGAACCTCCTTTCAACTATGACTCCATAACCCTTGTAAATATCTTGTCTGCCTGTGCAAACCTGGAAATATCAAGCCTAGGAAAGTCTCTGCATGGCCTTGCTCTTAAGACTCCTTTGGGATCAGATACTCGGGTTCAGAACTCATTAATTACTATGTATGGCAGGTGCAGAGACATCAACAGTGCCAAAGTAGTGTTCAAATTCTGTTCCATTCCCAATCTTTGCTCATGGAATTGCATAATCTCAGCTTTATCTCATAATGGAGAAAGTAGAGAAGCATTGGAACTATTTCGCCATATTCAGTTTGAACCAAATGAGATCACCATTGTTAGTTTTCTCTCTGCTTGCACACAAATCGGTGTCCTAAGACATGGAAAACAGGCCCATGCCCATGTGTTAAGGACTGGCATTGGAGATAATTCATTCATATCAGCAGCTCTTATAGATTTCTACAGCAACTGTGGAAGATTGGACAGTGCCTTACACGTATTCAGACATGCAAAGGAGAAGTCAGAATCAGCTTGGAATTCGATGATTTCTGCATATGGATATCATGGAAAGGGTGAGAAAGCAGTCAAACTCTTCAATGAAATGTGTGAGTCAGGAGAAAGGGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGGCATTCAGGACTTGTAAAGCAAGGCATTTGGTACTATGAGTGTATGTTGGAGAAATATGGAGTACAACCTGAGACTGAGCATCAAGTATATGTGGTTGACATGCTTGGGAGATCAGGTAGACTGGATGAGGCTTACGAGTTTGCTAAGGGGTGTGACAGCTCAGGTGTTTGGGGAACTCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGAAAACTAGTTGCTCAACGTCTCTTTCAATTGGAACCTCACAATGTTGGATATTACATATCATTGTCAAATATGTATGTAGCTGCAGGAAGCTGGAAAGATGCTACCGACTTGAGACAATCAATCCAGGATTTAGGTTTAAGAAAAACTGCAGGTTACAGTCTTATTGATTTTGATTTCTGA 2601 0.4048 MPHRTLRASDIHFQLVDYIKLSLRKPKIVSATAAHCAALKLGALAHLPNSTSLLTVYSRAGDFASSKSLFDEIPNRDVIAWNAMVAASLENKCYRTVMDFLEKMIKAETRFDSTTLLLMVSASSLMKNFDQGRAIHCVSIKYGMLKHIGLCNALIDMYAKCGDLSSSESVYQEMEGKDIISWNSIMRASIYNGDPVNALYYFKRVSFSEETVDSVSLSCAISASSSLGELALGQSIHGLGIKLGYKDSSYVSVSNSLISLYSQCEDIEAAETVFREIALKDTVSWNAMMEGFASNGKFNEVFDLLVEMQIVGSFPPDVVTLTTILPLCAELMLYREGRTIHGFAIRRQMIVSHHAMLRNSLIDMYSKCNLVEKAELLFNSTTEKDSVSWNIMISCYSHNRYSDEAQKLFREMLRCSLNCSSSTVFAILSSCDSLNSLHFGKSVHCWQLKSGFLNHILLINSLMHMYINCGYLAASFSILYENSALADIASWNTLIVGCVRCDHIREALDIFKLMRQEPPFNYDSITLVNILSACANLEISSLGKSLHGLALKTPLGSDTRVQNSLITMYGRCRDINSAKVVFKFCSIPNLCSWNCIISALSHNGESREALELFRHIQFEPNEITIVSFLSACTQIGVLRHGKQAHAHVLRTGIGDNSFISAALIDFYSNCGRLDSALHVFRHAKEKSESAWNSMISAYGYHGKGEKAVKLFNEMCESGERVSKSTFVSLLSACRHSGLVKQGIWYYECMLEKYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGCDSSGVWGTLLSACNYHGELKLGKLVAQRLFQLEPHNVGYYISLSNMYVAAGSWKDATDLRQSIQDLGLRKTAGYSLIDFDF* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0915 866 Pfam PPR repeat 490 516 IPR002885 -
Vra11g0915 866 Pfam PPR repeat 255 277 IPR002885 -
Vra11g0915 866 Pfam PPR repeat 359 380 IPR002885 -
Vra11g0915 866 Pfam PPR repeat 51 76 IPR002885 -
Vra11g0915 866 Pfam PPR repeat 151 178 IPR002885 -
Vra11g0915 866 Pfam PPR repeat 592 615 IPR002885 -
Vra11g0915 866 Pfam E motif 801 862 IPR046848 -
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 132 243 IPR011990 GO:0005515
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 619 IPR002885 -
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 517 IPR002885 -
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 617 855 IPR011990 GO:0005515
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 490 516 IPR002885 -
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 283 312 IPR002885 -
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 387 418 IPR002885 -
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 690 720 IPR002885 -
Vra11g0915 866 TIGRFAM PPR: pentatricopeptide repeat domain 592 617 IPR002885 -
Vra11g0915 866 Pfam PPR repeat family 689 733 IPR002885 -
Vra11g0915 866 Pfam PPR repeat family 280 326 IPR002885 -
Vra11g0915 866 Pfam PPR repeat family 384 430 IPR002885 -
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 443 541 IPR011990 GO:0005515
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 47 131 IPR011990 GO:0005515
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 244 333 IPR011990 GO:0005515
Vra11g0915 866 Gene3D Tetratricopeptide repeat domain 334 442 IPR011990 GO:0005515
Vra11g0915 866 PANTHER - 251 607 - -
Vra11g0915 866 PANTHER - 129 503 - -
Vra11g0915 866 PANTHER - 608 863 - -
Vra11g0915 866 PANTHER - 30 246 - -
Vra11g0915 866 SUPERFAMILY TPR-like 148 845 IPR011990 GO:0005515
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Vra11g0915 866 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vra11g0915 866 PANTHER BNACNNG15330D PROTEIN 30 246 - -
Vra11g0915 866 PANTHER BNACNNG15330D PROTEIN 129 503 - -
Vra11g0915 866 PANTHER BNACNNG15330D PROTEIN 251 607 - -
Vra11g0915 866 PANTHER BNACNNG15330D PROTEIN 608 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0915 Vra-Chr11 7846080 7849153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0915 212 863 Glycoside Hydrolase AT3G49170 31.138 3.89e-102 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0915 - - vra:106776702 1707.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0915 11 7846080 7849153 Vra11g0915 11 7846080 7849153 ECH