Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0908 ATGCCACAGAACTGCATAGCACCAAAGCCAGAATACTGTAATAGTCTTAACTCTGTGGAGGGACCTCCGGAGATGACTGAGTCCCATAACTCAACTGTCCTTTCTCATTCCATGCAAACCAATGAACAACAACAACAACAACAACCTTTTCCAAAACTCATTATGTACCCAATAACTCTGAAGTTTGAGGAACTGGTGTACAAAGTTAAACTAGAGCAGAAAGGAGGATGCTGGGGCAGTAAATGGACTTGCCAGGAGAAGACCATACTGAATGGAATTACTGGTGTGGTGTGTCCGGGAGAAATACTAGCTATGCTGGGGCCATCGGGCAGTGGCAAAACCACGCTTCTCACAGCACTTGGAGGCCGGCTCAGCGGCAAACTATCTGGTAAGATCACGTACAACGGGCAACCTTTCTCTGGTGCCATGAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATATCCTCACCTAACTGTCACTGAAACTCTAGTGTTCACTGCACTTCTGAGGCTTCCCAACAGCTTGAGCAGAGATGAAAAGGTTCAACATGTGGAGAGAGTGATCACTGAGCTAGGACTGACTCGTTGCAGGAGCAGCATGATAGGTGGCCCACTTTTTAGAGGAATATCAGGAGGAGAAAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATCAACCCAAGCCTCCTGTTGCTGGATGAGCCTACTTCAGGCTTGGATTCCACCACAGCACAAAGAATCCTCAACACAATCAAGCGCCTAGCTAGTGGGGGTAGAACTGTTGTCACCACTATTCACCAACCCTCTAGTAGGCTCTACTATATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGCTGCCCCATCTATTATGGTCCTGCTTCAACTGCCTTAGACTACTTCTCTTCTGTAGGCTTTTCCACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCAGACTCCAAGCAAGTAACTGAACAAAGCGAGGGACTGGAACAAGAGAGGAAACAGGTGAGAGAATCCCTCATCTCTGCTTATGAAAAGAATATAGCTACGAGGCTGAAAGCTGAGATTTGCAGCATGGAAGTGAACAACCCAAATATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGAACAATGGAGCACAAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGTGTGAAGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTACTGTGGTGGCATACTCCGGAGTCACACATTGAAGATCGGGTTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGTTCATCAGGAATGTATCGCCTTTCTTCCTACTTTCTTGCCAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTTTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACTTTTATCCTTTCTCTTCTTGTGGTTCTCTACAGTGTTGTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGTGCTATTTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGGTACTATATACAACAAATTCCTCCATTCATTGTGTGGCTCAAGTACTTGAGCTATAGCTACTACTGTTACAAGCTGCTTTTAGGTGTCCAGTACAATGAAAATGACTACTATGAATGTTCAAAGGGGGAGCTCTGCAAAGTGGCAGATTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCCTGATGTTGGTGGGTTATCGACTAGTTGCTTATTTTGCACTGCATAGAGTTAGGTAG 1986 0.4512 MPQNCIAPKPEYCNSLNSVEGPPEMTESHNSTVLSHSMQTNEQQQQQQPFPKLIMYPITLKFEELVYKVKLEQKGGCWGSKWTCQEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLSRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKQVTEQSEGLEQERKQVRESLISAYEKNIATRLKAEICSMEVNNPNITKDACARNSIKPEQWSTSWWHQFKVLLQRGVKERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLVAYFALHRVR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0908 661 Pfam ABC transporter 91 240 IPR003439 GO:0005524
Vra11g0908 661 Coils Coil 331 351 - -
Vra11g0908 661 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Vra11g0908 661 CDD ABCG_EPDR 57 294 - -
Vra11g0908 661 Pfam ABC-2 type transporter 269 367 IPR043926 GO:0140359
Vra11g0908 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 304 IPR027417 -
Vra11g0908 661 MobiDBLite consensus disorder prediction 19 48 - -
Vra11g0908 661 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 60 312 IPR003439 GO:0005524
Vra11g0908 661 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 659 - -
Vra11g0908 661 MobiDBLite consensus disorder prediction 17 48 - -
Vra11g0908 661 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 27 659 - -
Vra11g0908 661 SMART AAA_5 99 289 IPR003593 -
Vra11g0908 661 Pfam ABC-2 type transporter 400 605 IPR013525 GO:0016020|GO:0140359
Vra11g0908 661 Gene3D - 79 306 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0908 Vra-Chr11 7796681 7799786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0908 89 288 Calmodulin-binding Proteins AT2G36910 30.332 2.66e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0908 K05681 - gmx:100780191 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0908 11 7796681 7799786 Vra11g0908 11 7796681 7799786 ECH
Vra11g0908 11 7796681 7799786 Vra7g0303 7 4704407 4707696 PCT