Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0902 ATGGTACGCATCACTGCATCTGTGGCAACAGTAGCAACCCACCACCTATTCTTCGATCAAAAGCTTGATCTGAAGAACAACAACCCAAGTAGTTTGCCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACTTTTCCGCGTCCCCTCATTCCTCAAACAACTACTTTCACCATGAAGAAGCCAAAGAAAAAGAAAAGAAAAGAGGCTACAACCTCAGACATATTGCACTTGATGGACGCTCTACCTTTTCCTATACCCGTTGACATCTATACCTCATTGATAAAAGAGTGCACTGTTTCCGGTGACCCAGAAACTGCCATTGAGTTGTACACCCACATCTCCAAGAGCGGCATCAAACCCCCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTTGTGTCCTGTGGCCTGTTGGAAAATGCACGCCACATGTTTGACAAAATGCGTGTTAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCGTACTATGATAATGCTGATTATGAGGAGGCTACGGCTGTTTTTGTCAACATGTTAGGCCAATTGGGTACGTTGGAGTTTCCTCCGTGGATATGGGCTTGTCTTCTCCGGGCTTGTGCATGCACTTTGAATATCCCTCTGGGATTGCAAGTTCATGGATGGTTATTGAAGTTGGGTACTTGTGATCATGTGCTTCTCAGCAGCTCTTTGATAAACTTTTACGGGAGATTCACGAGCCTGGAAGATGCGAGTGCTATCTTCAATGGGGTTTCGCGGCATAACACGCTGACTTGGACGGCTAAAATCATTAGTGGTTGCAGGGAAAGTCATTTCTGTGAGGTTTTTGGCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACATTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGTTGAATCAGGAACGATGTGGTGAACAAGTACATGCTGATGCCATCAAACTTGGGCTGGTCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTGAGAGATGCAAAACAAGTGTTTGAGATGATCCGAGAGGAGAAAAAGGTTGACTGCTGGAATGCTATGCTTTCGGGTTACACAAGGAATGGTTTCTACATCGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCCGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGTACTCAAACATGA 1251 0.4596 MVRITASVATVATHHLFFDQKLDLKNNNPSSLPSPSHQLELLPPLRYPIHTFPRPLIPQTTTFTMKKPKKKKRKEATTSDILHLMDALPFPIPVDIYTSLIKECTVSGDPETAIELYTHISKSGIKPPLPFLNRILIMFVSCGLLENARHMFDKMRVRDFNSWATLFVAYYDNADYEEATAVFVNMLGQLGTLEFPPWIWACLLRACACTLNIPLGLQVHGWLLKLGTCDHVLLSSSLINFYGRFTSLEDASAIFNGVSRHNTLTWTAKIISGCRESHFCEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGLLRDAKQVFEMIREEKKVDCWNAMLSGYTRNGFYIEAVKFLYQMQAAGMQPRESLLKKLRIACGSTQT* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0902 416 Pfam PPR repeat 339 363 IPR002885 -
Vra11g0902 416 Pfam PPR repeat 368 396 IPR002885 -
Vra11g0902 416 PANTHER PPR REPEAT PROTEIN 69 413 - -
Vra11g0902 416 TIGRFAM PPR: pentatricopeptide repeat domain 368 399 IPR002885 -
Vra11g0902 416 TIGRFAM PPR: pentatricopeptide repeat domain 96 127 IPR002885 -
Vra11g0902 416 Pfam Pentatricopeptide repeat domain 82 140 IPR002885 -
Vra11g0902 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Vra11g0902 416 Gene3D Tetratricopeptide repeat domain 68 209 IPR011990 GO:0005515
Vra11g0902 416 Gene3D Tetratricopeptide repeat domain 274 416 IPR011990 GO:0005515
Vra11g0902 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vra11g0902 416 PANTHER OS07G0578800 PROTEIN-RELATED 69 413 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0902 Vra-Chr11 7736080 7737504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0902 166 416 Glycoside Hydrolase AT3G49170 23.396 1.13e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0902 - K08726 gmx:100778405 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0902 11 7736080 7737504 Vra11g0902 11 7736080 7737504 ECH