Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0865 ATGGCCAGCATAAAGCCTTTGCAGGAAGCAGTACGTAGTTCACTGCGTTCTGGCATTTTCCTGTTCGACTTCACGCGCGTCGTCGAGGAACTGGTTTTCAATAGCCTCGATGCCCGTGCCACAAAGGTATCAGTGTTTGTTGGTGTTGGGAGATCCTATTTGAAAGTAGTTGATAATGGAAGTGGAATTACTCGAGATGGACTTGAGTTGGTGGGAGAAAGATATGTTGTCGTCCGTGATTTATTTTACAATCAACCAGTTCGGAGAAAATACATACAGTCCAGTCCCAATAAGGTACTGCAATCAATCAAGAAGTGTGTAATGCGACTTGCACTTGTGCGTCCAAATATTTCTTTCAAAGTTGTTGATATTGAAAGAGAGGATGAACTCTTCTGCACACATTCTGCTTCTTCTCCTCTGTCACTTATAACCAGTGGCTTTGGGGTAGAGGTCACAAGCTCTCTTCACTATTTAGAAGTTGAGAATGATATCATAAAGCTTTCTGGATATGTATCCAGTCCTTGCAATACTTCAAACGTGGAGGTCCTGCAGTATGTCTATGTTAACTCGCAATTTGTTTGCAAGGGCCCAATTCATAAGCTTCTGAGTCAACTGGCTGTCAGGTTTGAACATCTGAACTCATGGACTACTGATAATGAGTTCCGAAATAAGAAGAGAAGCAGGTGTCACATGGGTCTCTCTTATCTCTTGGATTTGAGTTGCCCCCGATCTATGTATGATTTGGCCTTTGAGCCATCAAAAACGTATGTTAAATTTAAGGATTGGACACCTATTCTAAACTTCATTGAGAAGGTCATCAAACAATTCTGGGAGGAAAACATAGCTTCTGTAGAGCCCTCCAATCAATTTGCATATATGGTAGAAGATCAACAAGAAAAAGCATATGTCAGTGTCATTTCAGACGTACCAGATATGTCAAGGTTTAGAAACCAAAATCGTAAGGGTTGCCTAGATCTATTCTTTTCTACTTCAGACAAGCTAATTGAAGATGACTATCATCAATCAAATAGGGAAGATGTTAGAAACTCCATTGATTACTTGGAGGCCGTGATGTTCAAAGAGAAACAAAGTATAGGAGACTCTCTTTTTCAGACTGGTTATTCTGGCAACTTATTGGATGATTCTCATGCCAAGTGCGTATCCACTGTGACAAGAAGGCAGAACAGTTTGCTAATGCATGATAGCAGCAGTTCGTTGAAAGGAGATAACTTTTTTTATAGTGAAATACCGGCTATAGAAAGTTTAAATGATTGTGTACCTTTTGATGCACCGAGTTGTTCACGTGTAAGAAAATTCCATAAAGAAGCTGATATGATCAGTGAAGCATTTCAAGATGATTTACATTATGAATGCAACGGGCACAGTTATGATGTAAATATTAATGGGGATTTGCAGAAACCTTTTCTAAAGGGATGCTCTACCCCAGGAAGTATCCTGCTTAAGAAAGATTTCTTTATAAATGATGGATATGAAATCCAAAATGATAGCTTTTGTAGCAAGCAAAATACAGGGGGTGGTAAGGATTTAAATGATGATGTACCTTTTGATGAACCAAGTTCTTCACATGGAAGAAAATTCCATAAAGAAGCTGATGTGATCAGTGAGTCATTTCAAGATGATTTACGTTATAACTACAATGGGTACAGCTATGATGTAAATATTAATGGGGAGTTGCAGAAACCATTTCTAAAGGGATGCTCTGCACTAGGAATTATCCTGTCTAAGAAAGATTTCTCTGGAAATGATAAACATGAACTGCAAACTGACAGCTTTTGTAACAAGAAGAATACAGGGGAGGATTATAGAAGTGGTAAGGATTTATATGCCCATCCCTTTCCAGAAGTAAAAAAAAAATTAAAGATGTCTAAAACTTCCGATTTTCTTGAAAGACCATTGGCTGAAGAAAACTTTCTCCCTTCAGATTTATGCTACTCAGCATCACAAATAGTAGGAAGCTCTGACGCAGATGATCGGTCATTAAATTTTGAATGGCATCCTCTCTACCTAAAACCATCATCTCAAGGACATGCACTGGGTTTTTATCATAAAACTGATATCAAAGATGATATCGGAGGAGTATCTAGGTGCCTTAAATGGATCCATCATAAAAGTCGTTTTGATGAAAGAGAAAATGAGTGCAATTTCAGCTACAATACGTTATGGAATACCAACAAGCATCACTGTGCATCAAGTTATGAAAATATTGGATTTAATTTTGATGTTGCTCGTGATTCTAGTGAAATATTCAACAAATTTGGTGACTGCCATGATTTCAGTGACATATATTCTACAAGAAGGTCAGATATGTTAAACAAGAAGCTAGACTGGCTGTTGCCTGAGTCATGTGTTAAAAGATGCAAGATGCCTAACAAGAACAAAGGCAAAACAGATAAATTTAGAAATTCAACTTTGGAGGAAAGTTGTGAAAGATCTAGAAGAAGCATTTCAGCTCCTCCTTTTTATAGAAGCAAAAGGAGGTTTTTCTCTTTAAATCATCCCTCAGAAATAAAAGCTAAAAGACAGATTGACCGAGTGTATAACCCTGGCTTCAATCATGAAGAAGCTAGTAATTCTAAAGATCCTCAACAGCCTCCTGTTGTTCGTCATGAAAGCANTAAAGATCTCTTATTGCAAGAATTCAAAATCAATGTGAAACAAACTTCAGAGGTTCTGGGTGCTATGCAGGTTAATGACATAACAGAGACTGAAGAACTTGACAGTTTCAACATTCAAAACTGTGCTCCATTTGGGGAATTGCTCTCTAAGGATGTCCAAGATCCCATAGATTATGGGACTAAGTGGAGGAATTGCTCACCTGATTTTACAAAGAATGATAGACNGGCCAATACTCCATGTCGAAACAATATACTTGACATTTCTTCCGGATTGCATCTTGCTGGAGATTCATTGATTCCAGAAACTATCAGTAAGAAATTTCTTGAGGATGCTAAAGTTTTGCATCAGGTGGATAAAAAATTCATTCCAGTTGTGGCTGGCAGAACCCTTGTTGTTATTGATCAGCATGNAGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTGTCGGGAGAAGCAAAAACAGTAACCTATCTGCATACTGAACTGGAACTGGTACTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAGCGAACAGATCAAAGATTGGGGCTGGATATGCAACATCCATGCTAATAATTCCGAGACCTTTAGAAGGAATCTGGATATTATAAAAAGACAAGAAACAACGATCACACTTATTGCGGTACCGTGTATTTTAGGGGTCAAATTAAATGATGTTGACCTTTTAGAATTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACAATGCCACCCTCTGTCACACGATTGTTAAATTCGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTATAGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTGGTCAACTTGGAGGCACTGCATAGTCAGATAGCCAAGCTTCGACTGATGAACGAGTCTTCAAGTGAAAAGTGGCATGGATTACGCAAACATAAAGTATGCGTTGAACGTGTAGCACAGCGTTTAAATTCTGCTATGGAAGATTAG 3693 0.3853 MASIKPLQEAVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVGVGRSYLKVVDNGSGITRDGLELVGERYVVVRDLFYNQPVRRKYIQSSPNKVLQSIKKCVMRLALVRPNISFKVVDIEREDELFCTHSASSPLSLITSGFGVEVTSSLHYLEVENDIIKLSGYVSSPCNTSNVEVLQYVYVNSQFVCKGPIHKLLSQLAVRFEHLNSWTTDNEFRNKKRSRCHMGLSYLLDLSCPRSMYDLAFEPSKTYVKFKDWTPILNFIEKVIKQFWEENIASVEPSNQFAYMVEDQQEKAYVSVISDVPDMSRFRNQNRKGCLDLFFSTSDKLIEDDYHQSNREDVRNSIDYLEAVMFKEKQSIGDSLFQTGYSGNLLDDSHAKCVSTVTRRQNSLLMHDSSSSLKGDNFFYSEIPAIESLNDCVPFDAPSCSRVRKFHKEADMISEAFQDDLHYECNGHSYDVNINGDLQKPFLKGCSTPGSILLKKDFFINDGYEIQNDSFCSKQNTGGGKDLNDDVPFDEPSSSHGRKFHKEADVISESFQDDLRYNYNGYSYDVNINGELQKPFLKGCSALGIILSKKDFSGNDKHELQTDSFCNKKNTGEDYRSGKDLYAHPFPEVKKKLKMSKTSDFLERPLAEENFLPSDLCYSASQIVGSSDADDRSLNFEWHPLYLKPSSQGHALGFYHKTDIKDDIGGVSRCLKWIHHKSRFDERENECNFSYNTLWNTNKHHCASSYENIGFNFDVARDSSEIFNKFGDCHDFSDIYSTRRSDMLNKKLDWLLPESCVKRCKMPNKNKGKTDKFRNSTLEESCERSRRSISAPPFYRSKRRFFSLNHPSEIKAKRQIDRVYNPGFNHEEASNSKDPQQPPVVRHESXKDLLLQEFKINVKQTSEVLGAMQVNDITETEELDSFNIQNCAPFGELLSKDVQDPIDYGTKWRNCSPDFTKNDRXANTPCRNNILDISSGLHLAGDSLIPETISKKFLEDAKVLHQVDKKFIPVVAGRTLVVIDQHXADERIRLEELRQKVLSGEAKTVTYLHTELELVLPEIGYQLLHSYSEQIKDWGWICNIHANNSETFRRNLDIIKRQETTITLIAVPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVTRLLNSKACRGAIMFGDSLLPSECSLIVEELKHTSLCFQCAHGRPTTVPLVNLEALHSQIAKLRLMNESSSEKWHGLRKHKVCVERVAQRLNSAMED* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0865 1230 Pfam DNA mismatch repair protein, C-terminal domain 146 276 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vra11g0865 1230 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 1 1188 IPR028830 GO:0006298
Vra11g0865 1230 Coils Coil 1217 1230 - -
Vra11g0865 1230 MobiDBLite consensus disorder prediction 508 528 - -
Vra11g0865 1230 Pfam MutL C terminal dimerisation domain 991 1152 IPR014790 GO:0005524|GO:0006298
Vra11g0865 1230 SMART DNA_mis_repair_2 143 278 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vra11g0865 1230 SUPERFAMILY DNA mismatch repair protein MutL 990 1183 IPR037198 -
Vra11g0865 1230 MobiDBLite consensus disorder prediction 854 877 - -
Vra11g0865 1230 Gene3D - 1036 1147 IPR042121 -
Vra11g0865 1230 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 131 IPR036890 -
Vra11g0865 1230 SMART MutL_C_2 992 1152 IPR014790 GO:0005524|GO:0006298
Vra11g0865 1230 Gene3D - 77 143 IPR036890 -
Vra11g0865 1230 Gene3D - 1 76 IPR036890 -
Vra11g0865 1230 Gene3D - 146 284 IPR014721 -
Vra11g0865 1230 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1188 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Vra11g0865 1230 Gene3D - 995 1183 IPR042120 -
Vra11g0865 1230 SUPERFAMILY Ribosomal protein S5 domain 2-like 127 278 IPR020568 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0865 K08739 - gmx:100788019 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0865 11 7297322 7307587 Vra11g0865 11 7297322 7307587 ECH