Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0856 ATGATCCGGCACACGGCGTTGGACCCAGATTTTGCATACAAAGTATGTGGTGTGCTACAGCCGTTTTTGCTGTCACTGGCAAAGTCTTCGAATCCCGTAACGCTGAGACAATGCAGTCAAATCCACGCAAAGCTCATTGTCTCCCAATGCATTTCACAAACCCACTTAACCAATACTCTCTTGAATATGTATGCCAAATTTGGTCACCTTCGCCATGCCCATATCCTGTTCGACTATATGCCTAACAAGAATGTTGTCACCTGGACAACCTTAATTTCCTCGCATCTCCGAACTGGGTCACTCCCAAAAGCCTTTGAGATGTTCAATAAGATGCGTGAAACGAATGAGAGGCCCAATGAGTACACGTTCTCTGTTCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGGGAGTGGGTTTGCAGATTCATGGTCTGCTAGTTCGATCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTATTGTGCATATGTACTTTAACTGTGGCAATAATCTCGAGGGTGCATGTCGTGCTTTTCATGACTTGTTGACGAAAGACCTTGTTGCATGGAATGTTATGATTTCTGGGTTTGCTCATGTTGGTGACTTTAGCATGGTTCATAGGTTGTTTTCTGAGATGTGGGAGGTCCAAGGATTGAAACCCGATGATAGTACGTTTGTTAGCTTACTCAAGTGCTGTTCTTATTTAGAACAGGTAAAGCAAATCCATGGGCTTGCATCTAAGTTTGGTGCCGAAGCTGATGTTGTGGTGGGAAGTGCTATGGTTGACTTGTATGCCAAATGTGGGGATGTAAGTTCTTGCAGGAAAGTCTTTGACTCCATGGAGGAGAAGGATAACTTTGTTTGGAGTTCTATCATTTCAGGCTATACCATGAATGGTAGAGGCGAGGAAGCTGTGCATTTTTTCAAGGACATGTGTAGACAAAGGATTAGATCAGATCAGCATGTGTTTTCGAGTACTTTGAAAGCTTGTGTTGAACTGGAGGACTTTAACACTGGAGTTCAAGTGCATGGCCAAATGATAAAAGCTGGGTATCAAAAGGATTGTTTTGTAGCAAGTGTGTTGCTGACTCTCTATGCCAGTTTTGGTGAACTTGTGGATGTGGACAAGGTGTTTAGAAGAATTGTTGATAAAGATATTGTAGCGTGGAATTCGATGATCATGGCTCATGCTCAACCAGGGCGAGGATCTAGTCCCTCTATGAAACTATTACAAGAACTTCGCAGAACCACCTCGTTGCAAATTCAAGCTGCCACCCTAGTTATTATTCTGAAGTCTTGTGAGAATAAACTAGATTTTCCTGTAGGTAGACAAATTCATTCACTTATAGTAAAATCGAGTGTGAGCCATCATACTTTGGTTGGCAACGCATTAGTTCACGTGTACTCTGAGTGTGGACAAATTGGTGATGCATTTAAAGCTTTTATTGACATTGTCCAAAAAGATGACGGTTCTTGGAGTTCTATTATTGGAACTTATAAACAAAATGGGCTGGAATCAGAAGCTTTGGAGCTATGCAAAGAGATGTTGGCTGATGGAATCACTTTTACCGTTTATAGCCTTCCATTGTGTATTTCAGCTTGCTCACAACTTTCAATTATACAAGTGGGTAAACAACTCCATGTTTTCTCTATCAAGTCTGGTTACAACCGTCATGTGTATGTAGCAAGTTCCATCATAGATATGTATGCTAAATGTGGAACCATGGAGGAGTCGGAGAAGGTTTTTGGTGAACAAGTAGAGCCGAATGAAGTAATTTATAATGCTGTGATGTGTGGATATGCTCATCATGGAAAGGCACAAGAAGCCATAGAAGTATTTAATAAGTTAGAGAAGAATGGTTTGACCCCCAATCACGTAACTTTCTTGGCTGTGCTATCAGCTTGTAGCCATTCAGGTTATGTGGAAGATACTTTGTATTTCTTTACATTGATGCTTAACAAATACAAAATTAAGCCAGAATCTGAGCATTATGCATGCTTAGTTGATGCCTTTGGCAGGGCAGGAAGGTTAGAGGAAGCTTATCAAATAGTGCAGAAGGATGGAAGTGAATCAGCATGGAGAACATTACTAAGTGCTTGTAGGAATCATAATAACACAGAAATTGGAGAAAAATCTGCAATGAGGATGATAGAATTGAATCCCAGTGATCATGCTTCGTACATTCTTCTCTCAAACATTTACACTGGAGAGGGAAAATGGGAAGAAGCTCTTCAATGTAGGGAGAAAATGGCTAAAATTCGTCTGAAGAAAGATCCAGGCAGTAGTTGGTTGATTTGA 2301 0.4137 MIRHTALDPDFAYKVCGVLQPFLLSLAKSSNPVTLRQCSQIHAKLIVSQCISQTHLTNTLLNMYAKFGHLRHAHILFDYMPNKNVVTWTTLISSHLRTGSLPKAFEMFNKMRETNERPNEYTFSVLLRACATPSLWGVGLQIHGLLVRSGLERDKFAGSSIVHMYFNCGNNLEGACRAFHDLLTKDLVAWNVMISGFAHVGDFSMVHRLFSEMWEVQGLKPDDSTFVSLLKCCSYLEQVKQIHGLASKFGAEADVVVGSAMVDLYAKCGDVSSCRKVFDSMEEKDNFVWSSIISGYTMNGRGEEAVHFFKDMCRQRIRSDQHVFSSTLKACVELEDFNTGVQVHGQMIKAGYQKDCFVASVLLTLYASFGELVDVDKVFRRIVDKDIVAWNSMIMAHAQPGRGSSPSMKLLQELRRTTSLQIQAATLVIILKSCENKLDFPVGRQIHSLIVKSSVSHHTLVGNALVHVYSECGQIGDAFKAFIDIVQKDDGSWSSIIGTYKQNGLESEALELCKEMLADGITFTVYSLPLCISACSQLSIIQVGKQLHVFSIKSGYNRHVYVASSIIDMYAKCGTMEESEKVFGEQVEPNEVIYNAVMCGYAHHGKAQEAIEVFNKLEKNGLTPNHVTFLAVLSACSHSGYVEDTLYFFTLMLNKYKIKPESEHYACLVDAFGRAGRLEEAYQIVQKDGSESAWRTLLSACRNHNNTEIGEKSAMRMIELNPSDHASYILLSNIYTGEGKWEEALQCREKMAKIRLKKDPGSSWLI* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0856 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Vra11g0856 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 221 IPR002885 -
Vra11g0856 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Vra11g0856 766 Pfam PPR repeat 492 521 IPR002885 -
Vra11g0856 766 Pfam PPR repeat 665 686 IPR002885 -
Vra11g0856 766 Pfam PPR repeat 259 284 IPR002885 -
Vra11g0856 766 Pfam PPR repeat 564 585 IPR002885 -
Vra11g0856 766 Pfam E motif 704 765 IPR046848 -
Vra11g0856 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Vra11g0856 766 Gene3D Tetratricopeptide repeat domain 564 765 IPR011990 GO:0005515
Vra11g0856 766 Gene3D Tetratricopeptide repeat domain 217 338 IPR011990 GO:0005515
Vra11g0856 766 Gene3D Tetratricopeptide repeat domain 34 135 IPR011990 GO:0005515
Vra11g0856 766 Gene3D Tetratricopeptide repeat domain 405 544 IPR011990 GO:0005515
Vra11g0856 766 Pfam PPR repeat family 285 331 IPR002885 -
Vra11g0856 766 Pfam PPR repeat family 83 131 IPR002885 -
Vra11g0856 766 Pfam PPR repeat family 185 233 IPR002885 -
Vra11g0856 766 Pfam PPR repeat family 589 637 IPR002885 -
Vra11g0856 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vra11g0856 766 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Vra11g0856 766 TIGRFAM PPR: pentatricopeptide repeat domain 260 285 IPR002885 -
Vra11g0856 766 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Vra11g0856 766 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Vra11g0856 766 TIGRFAM PPR: pentatricopeptide repeat domain 86 120 IPR002885 -
Vra11g0856 766 PANTHER - 235 436 - -
Vra11g0856 766 PANTHER - 138 332 - -
Vra11g0856 766 PANTHER - 408 765 - -
Vra11g0856 766 PANTHER - 29 237 - -
Vra11g0856 766 SUPERFAMILY TPR-like 463 754 IPR011990 GO:0005515
Vra11g0856 766 Gene3D Tetratricopeptide repeat domain 339 404 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0856 Vra-Chr11 7213674 7216560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0856 91 765 Glycoside Hydrolase AT3G49170 30.970 9.09e-110 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0856 - - gmx:102667531 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0856 11 7213674 7216560 Vra11g0856 11 7213674 7216560 ECH