Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0848 ATGGTGGTTCCATTCAGAATGAACCATAACAAACATGGCATGCTTGTTCGTTTGAAGATTTTCGTCAACTCTCAGAATTTTAACTCACATGCTCCCAAACCGGCCAAACAACCAAAGCAAGATAGACAGTCTCCAAAAGAAGAATTGGACTACACTATTTGCGGAGATCGTATAGGCATCTCAGAATGGAAGACTTTGGATGCAGAGAAGCTTGGTGTAACTAGTTCTATGATTTCACACTCATCTATGTTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAGTCCTACTTAGTAGGTGGGTGCGTGAGAGATCTAATACTGAATAGAATTCCAAAAGATTTTGATGTTATCACCACAGCAAAGCTTATGCAGGTGAAAAATCATTTTCGCCGTTCAGTTCGTGCTCAAATTGTTGGCCGTCGTTTTCCAATATGCTTGGTTCATATTAAAGGTTCTGTAGTTGAGGTAACTAGTTTTGAGACAGTGGCACGAACTTCCAATGCGAAGGAACAATTTTTGTATTCTCAGCTGCCCAAATGCAGTAATAAAAAAGACTTATTTCGGTGCAAAAACTCCTTGCGTAGAGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACCAATGGAATGGCAGATTTGAGGACTTTAAAGCTAGAAACTGTTATCCCTGCTCAGTTGTCCTTCAAAGAAGATCCTGGAAGAATTTTGCGTGGCTTCAGACTTGCAGCTCGGCTAGGTTTATCATTATCAAGGGAGATTGAGGCTGCAATTTGGGCATATTCTTCTCTAGTTATGAACTTGGACAAGAATAAAATTATGATTGAATTGAACTATATGCTATCTTATGGAGCTGCTGAACCATCTCTGCATCTACTTTGGAAATTCAAATTGCTTAAATTTTTACTTCCTTTACATGCTGCATATCTAGATGAACAGGCTATTGAAGATGATCAAGCTTCCAATATGTTGTTAAAGTTATTCTTTCATCTGGATAAGTTGCTTGCTTGCGATCGACCTTGTGAGTGTACTCTGTGGATTGGATTGCTTGCATTTCACCTGGCATTAGTAAATGATCCTCAAGATGCTATAGTGGTGTGGACTTTTGCATCTGTTCTACATCATGGAGAGTGGAAAGAAGGTGTTAAATTTGCTAAAGAAAAGGCCAGAATGAGTGTTAATTTTGTACCTGAAATAAGAAAGTCTAATATATACGAATCAGATGATGAAATTGCAATAGCAGTTACTAAATTGGCATCTTTGGTGATGCACTCGATACATGCATTGGTTGATAAAAGTAGTCTTCGTCACTTCATGTGCATGCCTAGATACCCATCTTCTCCACAATCTGACATGGTATTTGTATCCGGGAAAGCAGGGAAACGTGCTCATACAATTTTCCAAATGCTGGCCAATGATGGTAAATTTTACAAGAGTGGAAGAAGAAAAAATTTGAAGATAAATTATGACATGCTTGGGAAGGGTGAACTTTCAGAGACTGGATTTGTTTTAGGCAAAATTGTACTTGAAACTATGAGTAGTGGAATTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGTCACCTAAAGACCGAGGGCACTGAAGAAATTGGTCCATTGCCACATCCAGATCTGGTAAACAATCAAGTGGCGTCAATGGATGGTGAAGGTCAACTTTTATCAATACCAAATTCAGAGTGCGGGAAAGGAGAAAACAAGAAACGGAAACTGGTTGAGGATAGTTGTATTGCGAGGAAGAAAATGAGCTCGGGGAACCATGAATTGTCTGAGGAATTTGAACGCAAGGAAAATAAAAAACAGCAGCAGAAGCTAGTTAAGTTAAGCCATAAGGTTGATCCATCCATGGCGAAGTACTCCGCAGAAAAGAATATTTATCACAGAAAACAACTGATAAATAATAGGAAGAAAATAACCAGTGCCAATACATGTCTAGACCAAACTATGCCAATGAAGACGGATGAACACAACACATGTACGGCATCACAATCTGCAGAATCTGATAATCATCGGGTGATAGCTCACAACTTAGACATGGATGCAAAAACAACAGATAACAACTTGGACGTGGATCCAAAAACGCCAAATGAATCGGACTTGAAGAAGAAAAAAAATATGCGTTTATCAATGATTGAACTTTTCAAGTGA 2193 0.3871 MVVPFRMNHNKHGMLVRLKIFVNSQNFNSHAPKPAKQPKQDRQSPKEELDYTICGDRIGISEWKTLDAEKLGVTSSMISHSSMFVLKLLRSKGFESYLVGGCVRDLILNRIPKDFDVITTAKLMQVKNHFRRSVRAQIVGRRFPICLVHIKGSVVEVTSFETVARTSNAKEQFLYSQLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTNGMADLRTLKLETVIPAQLSFKEDPGRILRGFRLAARLGLSLSREIEAAIWAYSSLVMNLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLKFLLPLHAAYLDEQAIEDDQASNMLLKLFFHLDKLLACDRPCECTLWIGLLAFHLALVNDPQDAIVVWTFASVLHHGEWKEGVKFAKEKARMSVNFVPEIRKSNIYESDDEIAIAVTKLASLVMHSIHALVDKSSLRHFMCMPRYPSSPQSDMVFVSGKAGKRAHTIFQMLANDGKFYKSGRRKNLKINYDMLGKGELSETGFVLGKIVLETMSSGIVGDGEDSEAGQCHLKTEGTEEIGPLPHPDLVNNQVASMDGEGQLLSIPNSECGKGENKKRKLVEDSCIARKKMSSGNHELSEEFERKENKKQQQKLVKLSHKVDPSMAKYSAEKNIYHRKQLINNRKKITSANTCLDQTMPMKTDEHNTCTASQSAESDNHRVIAHNLDMDAKTTDNNLDVDPKTPNESDLKKKKNMRLSMIELFK* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0848 730 Pfam Probable RNA and SrmB- binding site of polymerase A 255 317 IPR032828 -
Vra11g0848 730 Gene3D - 227 454 - -
Vra11g0848 730 SUPERFAMILY Poly A polymerase C-terminal region-like 227 365 - -
Vra11g0848 730 Gene3D Beta Polymerase, domain 2 63 224 IPR043519 -
Vra11g0848 730 Coils Coil 601 621 - -
Vra11g0848 730 SUPERFAMILY Nucleotidyltransferase 71 223 IPR043519 -
Vra11g0848 730 MobiDBLite consensus disorder prediction 28 47 - -
Vra11g0848 730 MobiDBLite consensus disorder prediction 598 625 - -
Vra11g0848 730 MobiDBLite consensus disorder prediction 598 622 - -
Vra11g0848 730 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 10 726 - -
Vra11g0848 730 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 10 726 - -
Vra11g0848 730 Pfam Poly A polymerase head domain 97 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vra11g0848 730 CDD NT_ClassII-CCAase 87 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0848 Vra-Chr11 7115432 7122837 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0848 - - gmx:100794882 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0848 11 7115432 7122837 Vra11g0848 11 7115432 7122837 ECH