Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0799 ATGATGTTAGACGGAACCGAAGATGAAGAGAAGTTTCTCGCCGCTGGAATCGCCGGTCTGCAGCAGAACTCTTTCTACATGCACCGTGCATTGGATTCCAACAATCTCCGAGACGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATATATGCGTGCCTTTGATCAGTTACGGAAACTTGAGATGTTCTTCGAGGAAGAGACTCGTCGTGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCATGCTGGAAACATTTTGCCGCGATTGTATCTCCTCTGTACAGTAGGATCAGTATACATCAAGTCCAAGGAAGCTCCCGCAAAGGATGTTCTTAAGGATCTTGTGGAGATGTGTCGCGGTATTCAACACCCTGTTCGTGGACTCTTTCTAAGGAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGGGATGCGGATACTGTAGCGGATGCTGTAGAATTTGTACTTCAAAATTTCACTGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAAACGAGAAAAGGAAAGGAGCGAGTTGCGTGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATTGAGGGTGTTGACCTAGATATGTACAAAGATGCCGTGCTTCCCAGAGTACTGGAGCAGGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTCTACTTGATGGATTGCATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTGTTATTGGGTGCTTACCCTCAACTTCAGGCGTCAGTTGATATCAAGACAGTGCTGTCTCAGTTAATGGAGAGGCTTTCAAATTATGCAGCTTCAAGTGCAGAGGTGTTGCCAGAGTTTTTGCAAGTTGAAGCATTTTCGAAATTAAGCAATGCCATTGGCAAGGTGATAGAGGCACAACCTGACATGCCCACTGTTGGAGTTGTAACTTTGTATTCATCACTTCTCACCTTCACGCTTCATGTTCACCCTGATCGCCTTGATTATGCAGATCAAGTCTTGGGAGCATGTGTGAAAAAACTATCCGGCAAAGGGAAAATTGAGGACAACAAGGCAACTAAGCAGATTGTTGCTCTATTAAGTGCTCCACTAGAGAAATATAACGATGTTATGACTGCACTGAAGCTTTCAAATTATCCTCGTGTAATGGAATACCTTGATATTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGGAACACACATTTCTACATCAGAAAAGGTTGATGCATTGTTTGGACTGATAAAGGGGCTCATCAAGGATTCTGATGGAGTTCCTAAAGACGAGCTTGATGAAGACGATTTCAAAGAGGAGCAGAATTCTGTTGCCCGCCTGATCCAAATGCTTTATAATGAGGATCCAGAAGAAACGTTTAAGATCATTGATACTGTGAGGAAGCACATACTGACTGGAGGACCAACACGTCTGCCTTTCACTGTTCCACCTCTTGTTTTTTCTTCTTTAAAGTTGGTCAGGCAGTTGCAAGGTCAAGAAGAAAATCCTTTTGGAGATGATGCCTCAGTAACACCAAAGAAAATATTTCAGCTTTTAAATCAGACCATCGAGACCTTGTCAGGTGTCCTGGCACCAGAATTAGCACTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCTGTTGCTTATGAATTTTTTACACAAGCTTATATTCTATATGAAGAAGAAATTTCTGATTCCAGAGCACAGGTCACAGCTATCCATCTAATAATAGGAACTCTTCAAAGGATGCATGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCTGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTATATGCATGCTCCCATCTGTTTTGGGTTGATGATCACGATAACATGAAAGATGGAGAGAGGGTCCTATTATGTCTCAAACGGGCTTTACGAATTGCAAATGCTGCCCAACAAATGTCAAATGCAGCTCGAGGTAACACGGGATCAGTAATGCTCTTCATCGAGATATTAAACAAGTATCTCTACTTCTTTGAGAAGGGAAACCTACAAGTAACCGTTGCTGCTATACAGGGCTTAATCGAGTTAATTATGAATGAAATGCAGAGTGATACCACGACTTCAGATCCAGCTGCCGATGCTTTCTTAGCCAGTACTATGCGATATATAGAGTTCCAGAAACAAAAAGGTGGTACCGTAGGCGAGAAGTATGAAGCTCTCAAGGTTTCACACGCTGGATGA 2385 0.4277 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDAVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQASVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGKGKIEDNKATKQIVALLSAPLEKYNDVMTALKLSNYPRVMEYLDIPTTKVMATVIIQSIMKNGTHISTSEKVDALFGLIKGLIKDSDGVPKDELDEDDFKEEQNSVARLIQMLYNEDPEETFKIIDTVRKHILTGGPTRLPFTVPPLVFSSLKLVRQLQGQEENPFGDDASVTPKKIFQLLNQTIETLSGVLAPELALQLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMSNAARGNTGSVMLFIEILNKYLYFFEKGNLQVTVAAIQGLIELIMNEMQSDTTTSDPAADAFLASTMRYIEFQKQKGGTVGEKYEALKVSHAG* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0799 794 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vra11g0799 794 Gene3D - 466 775 IPR042491 -
Vra11g0799 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Vra11g0799 794 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vra11g0799 794 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
Vra11g0799 794 SUPERFAMILY ARM repeat 210 748 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0799 Vra-Chr11 6574822 6585675 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0799 K18468 - gmx:100811902 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0799 11 6574822 6585675 Vra11g0799 11 6574822 6585675 ECH