Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0789 ATGGTGCTCGAGGCAACGATGATCTGTATCGACAATTCGGAATGGATGCGTAACGGGGATTACGCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTTAATCTTATTTGTGGTGCAAAGACTCAGTCTAATCCAGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGCGTTCGAGTTTTGGTCACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGGACTAGAAACTGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGCTGGCTCTTAAGCATCGGCAAAATAAAAAGCAACAGCAGAGAATTATTGTCTTTGCTGGAAGTCCTATCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAAAAAGAACAGTGTTGCCCTTGATATTGTTAATTTTGGTGAAGAAGATGAGGGGAAGTCAGAGAAGCTGGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATCGTACACGTCCCATCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCTATTTTTACCGGTGATGGGGAAGGTGGAAGTGGTTTTGCTGCAGCTGCTGCTGCTGCAGCAGCTGGTGGTGTATCTGGATTCGAATTTGGTGTGGATCCAAACTTGGATCCAGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGATGCTGCCAATCAAGAGAAGGGAGGTGAGCAGCAAGCCAGCTCACAAGATGCAACAATGACTGAGCATGCCAGTGCAGCAATGTCTGAAGTTGAGAACATGACAAGTGATTTGATGGTTGGTTATGAGAATCTTAGGCAGGCACTAGCAATGTCAATGGACGATCCTGCCATTAGCCATGATGTAAAGGATACAGATATGTCAGAAGCATCTGCAAGTGATCCCGAGTTGGCTCTAGCTCTCCAGTTGTCAATAGCAGATAGTTCAAAGGATCAAACAAGTCAGTCGGACATGAGCAAATTGTTGGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCTCTTCCTGGGGTTGACCCAAATGATCCTTCTGTCAAGGATTTACTGGCGTCGATGCAAAATCAGTCTGAGCCTCAACAGAAGAACGATGACAAGCCATCAGAGGAGGAAGAAAAGAAGTAA 1215 0.456 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKSEKLEALLAAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAANQEKGGEQQASSQDATMTEHASAAMSEVENMTSDLMVGYENLRQALAMSMDDPAISHDVKDTDMSEASASDPELALALQLSIADSSKDQTSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNDDKPSEEEEKK* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0789 404 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Vra11g0789 404 Pfam Ubiquitin interaction motif 294 306 IPR003903 -
Vra11g0789 404 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Vra11g0789 404 Pfam Ubiquitin interaction motif 325 339 IPR003903 -
Vra11g0789 404 Gene3D - 220 286 - -
Vra11g0789 404 SUPERFAMILY vWA-like 4 175 IPR036465 -
Vra11g0789 404 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Vra11g0789 404 MobiDBLite consensus disorder prediction 258 279 - -
Vra11g0789 404 MobiDBLite consensus disorder prediction 364 404 - -
Vra11g0789 404 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Vra11g0789 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Vra11g0789 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 403 - -
Vra11g0789 404 Coils Coil 232 252 - -
Vra11g0789 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 403 - -
Vra11g0789 404 MobiDBLite consensus disorder prediction 242 279 - -
Vra11g0789 404 SMART VWA_4 2 175 IPR002035 -
Vra11g0789 404 CDD VWA_26S_proteasome_subunit 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0789 Vra-Chr11 6496648 6501007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0789 K03029 - gmx:100814594 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0789 11 6496648 6501007 Vra11g0789 11 6496648 6501007 ECH
Vra11g0789 11 6496648 6501007 Vra7g0149 7 2476063 2480596 PCT