Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0785 ATGGCTCTGCTCTCATATACCTCACACCCTTCTCAAGCGCTCTTGGGCATCGCACTCTTCCTCGTCTTCAGAGGGGTTTCAGGGGCAACCTTTACTTTCGTCAACAAGTGCGATTACACGGTGTGGCCAGGGATTTTAGGCACGCCGGAACTCGCAACCACGGGCTTTGAACTCGCCAAGGGGGGTTCCAGAAGCTTCCAGGCTCCGACCGGTTGGTCCGGTAGATTCTGGGGCAGAACCGGTTGCCAGTTCGACAATTCCGGCCGCGGGACCTGCGCCACCGCCGACTGCGGTTCTGGAGAGGTCAACTGCAACGGCGCCGGAGCCTCCCCGCCGGCGACTCTCGCCGAGTTCACTCTCGGCACCGGTTCCATGGACTACTACGACGTGAGCCTCGTCGACGGCTATAATCTGCCGATGATGGTGGCGGCGAGAGGCGGGTCGGGGTCCTGCGCCACCACGGGGTGCGGCGAGGATCTCAATCGGCGTTGCCCATCGGAACTGAGGGTGGAGGGCGGCGACGCGTGTCAGAGCGCCTGCGGCGCGTTTGGGAAACCGGAGTATTGCTGCAACGGCGCGTTTGGTAACCCTTCGACTTGCAAGCCTTCTACTTACTCTGAAATTTTCAAGTCCGTATGTCCCAAAGCCTATAGTTACGCGTACGATGATGCCACCAGCACGTTCACGTGTTCCGGCGCCGACTACACAATAACATTTTGCCCCTCTTCTCCTAGTTTGAAGTCTTCTACAGATTCGAGTCCAAAGGGAACGGATTCTGAGTCTGGGAGTGTGACGGGGACAGGTTCGTCGGTGGAACAATCGGAATTGGCTTCTACTTCGTGGTTAGCCGACATGGCAACGGCGACAGGGGCCTCGACGCGAGCACGGCCTTTTGTGACTTCAAAGGTGTATTTTTGGGTGGTTGTTGTTTTCATTCTTTCACTTTTGGTGGGTCCCTCTCTCTCCTAG 969 0.5769 MALLSYTSHPSQALLGIALFLVFRGVSGATFTFVNKCDYTVWPGILGTPELATTGFELAKGGSRSFQAPTGWSGRFWGRTGCQFDNSGRGTCATADCGSGEVNCNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMMVAARGGSGSCATTGCGEDLNRRCPSELRVEGGDACQSACGAFGKPEYCCNGAFGNPSTCKPSTYSEIFKSVCPKAYSYAYDDATSTFTCSGADYTITFCPSSPSLKSSTDSSPKGTDSESGSVTGTGSSVEQSELASTSWLADMATATGASTRARPFVTSKVYFWVVVVFILSLLVGPSLS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0785 322 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Vra11g0785 322 Pfam Thaumatin family 35 241 IPR001938 -
Vra11g0785 322 CDD TLP-PA 30 240 - -
Vra11g0785 322 PANTHER OS03G0233200 PROTEIN 14 261 IPR001938 -
Vra11g0785 322 SMART tha2 31 241 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vra11g0785 322 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Vra11g0785 322 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Vra11g0785 322 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 14 261 - -
Vra11g0785 322 MobiDBLite consensus disorder prediction 244 271 - -
Vra11g0785 322 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Vra11g0785 322 Gene3D Thaumatin 29 241 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0785 Vra-Chr11 6477730 6479407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0785 11 263 Receptor kinase-like Gene Family AT5G38280 48.120 3.50e-75 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0785 - - gmx:100815652 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0785 11 6477730 6479407 Vra11g0785 11 6477730 6479407 ECH