Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0752 ATGGAACTGCAGCTACAGCCAAAGGCGGTACCCGCGGTTGAGGTTCATGCTGGGGATTTGGAGAAGTCATATGTCACGGAGGTTCGCAACGTTGACATGGCTGAGGCAAACGAAGGTTGTTGCGTCACTGTTTTGAAGCGAAAGCGTGGTCGTCCGGCCAAGGGAGACCGTGTTCTCAAAACCACGGCACCGCCGACGAAGCATAGCAGGGACGAAGAGGATGTTTGCTTCATATGCTTCGACGGTGGAAGCCTCGTTCTCTGCGATCGCCGGGGATGCCCTAAGGCGTATCATCCCTCGTGTGTTAAGCGGGACGAGGCGTTTTTTCGCTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTGGGAAGGGGTCACATTATAAGTGCTATACTTGTACATATTCTTTGTGCAAGGGGTGTACAAAAAGGGCAGATTTTGTCTCTGTCAGAGAAAATAAAGGTTTATGTGGAATGTGCAAGAGGACTATAATGCTGGTAGAGAATTGTGCTCAGGGAGATAAGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATATTTGAAGGAGAAGCTATCTTTGACCATTGATGAGATCCTTGAAGCTAAAAATCCATGTAAAGGTGTTGCGAGATTAGAAGTATCTGGTGTCGCAGCAGGTGTTTCATCATTACTACTCTCTCCAAAGATGGAGCTGCCAATTGGCAATATTGCGAATGATAAACTGTGGCATTATCAGGATCCAACCGGGAAGGTTCAAGGACCTTTCTCTTTAGTGCAGCTTTATAAGTGGAATGTGAGCGGATATTTTCCTGCAGAACTCAGAATATGGAGGATAGATGAGACACAAGATAATGCTGCATTATTAATTCATGTGCTTAGTGGGAAGTGCTCAAAACTTGTGTCATTGACATACGACAGTCAGAAGCTGTCTCTGGAGACCAATAGTACATTGGAAAATAAAGAAAGTAGTCAGGATGGTGGTGTTGAGCACAATATGACAACAAATGGAAATTCTGCGAACCACCAAATTGTTGACCAGTGTGGGGAGCAAAAATTGGTTGATACCTGTACACAATCCAATGGTAAAGATGAATCTGTTAAGAGCAATGGTTGGCACTCTCAGTCTCCGGGTTGGACTATACAAGCAGATGGGAATAATAATGAGGGGCAAAGTGGAAATTCTGAAAGGAGAGAGGATTCGCCCAAATGTGAGGACGGTCCTCACTTACACCCTTCGCTACCTTCAACTGCATTTTGTGAAAAACTCGAAGAGAATCCTTCTGATAAATTAGAGGAAGTTCATAAGATGGAGGTGAAGTCTGAAGATAATGGAAATTTTGACTTGAACAGAATTTTTGATGGTCAAAGTAATAGTGGACAAAATTATCAGAAACAATCAGACAGTGAGGATAATTCTGGGCAATCTTCTGGTCAGAACTGGAGTTGCCCTAGTGTAACTAATCCAGTTTGTAACCTATCTACATGGCTTTCAATCTTTGGCGAACCAAATGATTTGGATGAGTCAGTTTCAGATCTGTTGGCTGAAGTGGAGGCAATGGAGTCACTTGGTGGTGGCCTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAGCTGACTGACGGTTCTATAACTGATTGTCTTAGTTTTGCAGATGGGCTTAGCCCAATGATTGATGCAGCAGGTAAAGGTGATGCACTGAGTTCCTCAGGTGATTTACACTTTCCATCTCAAACCACAACACCAGATGAACCAACTAAGCAAACCGACGTGTGCCATCAACATCAAAAGATATTTGGGGAGCATACATCGAAGAGTTCAGAAGTTGAGTCTACATTCTCTAAAATTAGCTGGAATCCACACATTCAATTTTCCTGGGGTCCTCCTAACTGTTGA 1935 0.4382 MELQLQPKAVPAVEVHAGDLEKSYVTEVRNVDMAEANEGCCVTVLKRKRGRPAKGDRVLKTTAPPTKHSRDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCVKRDEAFFRSKAKWNCGWHICSICGKGSHYKCYTCTYSLCKGCTKRADFVSVRENKGLCGMCKRTIMLVENCAQGDKCEVDFDDKSSWEYLFKVYWTYLKEKLSLTIDEILEAKNPCKGVARLEVSGVAAGVSSLLLSPKMELPIGNIANDKLWHYQDPTGKVQGPFSLVQLYKWNVSGYFPAELRIWRIDETQDNAALLIHVLSGKCSKLVSLTYDSQKLSLETNSTLENKESSQDGGVEHNMTTNGNSANHQIVDQCGEQKLVDTCTQSNGKDESVKSNGWHSQSPGWTIQADGNNNEGQSGNSERREDSPKCEDGPHLHPSLPSTAFCEKLEENPSDKLEEVHKMEVKSEDNGNFDLNRIFDGQSNSGQNYQKQSDSEDNSGQSSGQNWSCPSVTNPVCNLSTWLSIFGEPNDLDESVSDLLAEVEAMESLGGGLESPTSIMKCGEELTDGSITDCLSFADGLSPMIDAAGKGDALSSSGDLHFPSQTTTPDEPTKQTDVCHQHQKIFGEHTSKSSEVESTFSKISWNPHIQFSWGPPNC* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0752 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 165 IPR013083 -
Vra11g0752 644 SMART PHD_3 75 121 IPR001965 -
Vra11g0752 644 ProSitePatterns Zinc finger PHD-type signature. 76 136 IPR019786 -
Vra11g0752 644 MobiDBLite consensus disorder prediction 368 427 - -
Vra11g0752 644 CDD PHD5_NSD 75 120 - -
Vra11g0752 644 SUPERFAMILY FYVE/PHD zinc finger 48 120 IPR011011 -
Vra11g0752 644 SUPERFAMILY GYF domain 251 304 IPR035445 -
Vra11g0752 644 CDD GYF 252 296 IPR003169 GO:0005515
Vra11g0752 644 Pfam GYF domain 255 295 IPR003169 GO:0005515
Vra11g0752 644 MobiDBLite consensus disorder prediction 584 600 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 22 224 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 245 510 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 499 625 - -
Vra11g0752 644 Gene3D - 254 310 IPR035445 -
Vra11g0752 644 MobiDBLite consensus disorder prediction 576 604 - -
Vra11g0752 644 SMART gyf_5 253 308 IPR003169 GO:0005515
Vra11g0752 644 MobiDBLite consensus disorder prediction 439 494 - -
Vra11g0752 644 MobiDBLite consensus disorder prediction 439 459 - -
Vra11g0752 644 MobiDBLite consensus disorder prediction 405 419 - -
Vra11g0752 644 MobiDBLite consensus disorder prediction 462 494 - -
Vra11g0752 644 MobiDBLite consensus disorder prediction 327 353 - -
Vra11g0752 644 ProSiteProfiles GYF domain profile. 252 306 IPR003169 GO:0005515
Vra11g0752 644 MobiDBLite consensus disorder prediction 368 404 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 499 625 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 245 510 - -
Vra11g0752 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 22 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0752 Vra-Chr11 6104389 6108426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0752 - - gmx:100800608 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0752 11 6104389 6108426 Vra11g0752 11 6104389 6108426 ECH