Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0687 ATGGTGCACAGCGCGTACGATTGCGTGGAGCTGGTGCCTGAGTGCCCTGCCAAGATCGAATCCGTCGAAGCCTACGGTTCGAAGCTCCTATTAGGTTGCTCCGATGGATCGCTCCGAATATTCGCGCCGGAAACGGAATTCTCCTCCGACGGGTCCAAGTCCTACGCGTTGGAGAGGAACCTTGTCGGGTTTGCGAAGAAGCCCGTGCTATCAATGGCGGTGGTGGAGTCGCGAGAGCTCCTCATATCGCTCTCCGAATCTATCGCTTTCCACAAACTACCTTCCTTCGAGACCATCGCGGTGATCACCAAGGCCAAGGGCGCCAACATCTTCTGCTGGGACCACCGCCGAGGCTTCCTCTGCTTCGCTAGGCAGAAGCGCGTTTGCATCTTCAGACACGATGGTGGCAGGGGATTTGTGGAGGTGAAAGAGTATGGCGTGGGGGATGTGGTGAAGTCCATGTGTTGGTGCGGCGAGAATATATGTTTGGGAATTAGAAGAGAGTACGTGATTCTGAATGCTTCGAATGGAACTTTGTCTGAGGTATTCACTTCGGGGAGACTAGCGCCTCCTCTGGTCGTTTCTCTTCCCACTGGAGAACTCCTTCTTGGAAAGGAGAACATTGGGGTTTTTGTGGACCAAAATGGGAAGCTTCTTCCCGAAGGTAGGATTTGCTGGTCTGAGGCTCCTTTGGAAGTTGTGATTCAGAAGCCGTATGCTATAGCTTTGCTGCCCAGATTTGTGGAGATTCGATCTCTCCGAGCTCCTTATTCTTTGATACAGACAGTTGTTCTTCGAAATGTTCGTCACCTTTGCCAGAGCAATGATTCCATGATACTTGCTTTGGATAATTCAGTTCATGGCCTCTTCCCTGTTCCCCTTGGAGCCCAGATAGTCCAATTAACAGCTTCTGGCAACTTTGAGGAGGCCTTGTCACTGTGCAAACTTCTTCCACCTGAAGATTTAAGTCTCCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCTCACTATCTTTTTGAGAATGGGAGCTATGAAGAGGCTATGGAACATTTTATGGAATCTCAAGTAGATATAACCCATGTGCTTTCACTGTATCCATCCATTATTCTTCCAACCACAACTATTGTTCACGAGCTAGAAAAGTTGGACATTTATGGGGATGCTTCATATCTCTCAAGAGCTTCTTCAGGTGTGTCAGATGATATGGAGCCCTCATCAACATCTCATATGTTAGAATCTGATGAAAATGCAGCACTTGAATCAAAGAAAATGAACCATAATATGCTTATGGCTCTCATAAAATACTTACAGAAGAAGAGATATAGTTTTATTGAGAAGGCCACTGCTGAAGGAACTGAGGAAGTCGTTTTAGATGCTGTTGGGGATAACTTTGCATCTTACAACAGGCTTAAGAAATCAAACAAGGGGCGTGGTAGTATGCCTGTTAGTTCTGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTTTACTCCAAGCATTGCTTCTAACTGGACAACCTTCAGTGGCTTTAGAGTTACTGAGAGGTGTTAACTACTGTGACTTGAAAATATGTGAAGAAATACTTCGAAAAGACAATCACAATGTTGCTTTATTAGAACTTTACAAGCACAACTCATTGCATCGGGAGGCTCTTGAACTTCTTCACAAATTGGTGGATGAGTCAAAATCTAACCAGTCTAAAATTACACAAAGATTCAAGCCTGAGGATATTGTAGAGTATCTCAAGCCGCTCTGTGGGACAGACCCCATTCTTGTACTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGCCCATCTCAAACTATAGAGCTCTTTCTTTCTGGAAACATTCCAGCAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAACCATGCAAGCCAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCGGTATCTGGCAATTTGCAGAATGAAATGGTACACATATATCTTTCTGAAGTACTCGATTGGCATGCTGGTTTATGTGCCCAACAAAAATGGGATGAGAAAGATTATTCCCCAACAAGAAAAAAATTATTGTCTGCCTTGGAGACCATTGCAGGATACAATCCAGAGGCTTTGCTAAAACGCCTTCCACCAGATGCTTTATATGAAGAGCGTGCGATATTGTTGGGAAAAATGAACCAACATGAATTGGCATTATCTTTGTATGTTCACAAGCTCAATGCTCCAGAACTAGCATTGTCATATTGTGATCGGGTCTATGAGTCTATGCGCCAGCCATCTGCAAAATATTCCAGTAACATATACCTTGTGCTTATGCAAATTTATTTGAATCCTCGAAGGACCACAGCAGGTTTTGAAAAGAGAATTACAAATCTATTATCCCCACAGAATAAAACCATTCCAAAGCTTACTTCTACGCCATCCATGAGAAGTAGAGCTCGAGGGTCTAAGAAAATTGCTGCAATAGAGGGTGCAGAGGACACAAAAGTTAGTTTAAGTAGCACTGACAGTGGCAGGAGTGATGGTGATGCAGATGAATATAGTGAGGGTAGTTCTACTACTATCATGCTTGACGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTCTACCGAAAGAGACAAAATTACAGGACCTGCTCTCATTTCTTGGACCCCTTTTGAAAAAATCAAGTGAAATGTACCGAAACTGTTCGGTGATCAAGAGCTTGAGACAAAGTGAGAACCTTCAGGTGAAAGATGAACTGTACAGTCAGAGGAAAACAGCAGTGAAGATAACTGGAGATAGCATGTGCTCTCTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCAAACGGTAGCACTCTCGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGTGGTTGGAAAAGGGTCTCAATTGAAGAAGCGATTATGA 2970 0.4404 MVHSAYDCVELVPECPAKIESVEAYGSKLLLGCSDGSLRIFAPETEFSSDGSKSYALERNLVGFAKKPVLSMAVVESRELLISLSESIAFHKLPSFETIAVITKAKGANIFCWDHRRGFLCFARQKRVCIFRHDGGRGFVEVKEYGVGDVVKSMCWCGENICLGIRREYVILNASNGTLSEVFTSGRLAPPLVVSLPTGELLLGKENIGVFVDQNGKLLPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRAPYSLIQTVVLRNVRHLCQSNDSMILALDNSVHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDLSLRAAKEGSIHIRYAHYLFENGSYEEAMEHFMESQVDITHVLSLYPSIILPTTTIVHELEKLDIYGDASYLSRASSGVSDDMEPSSTSHMLESDENAALESKKMNHNMLMALIKYLQKKRYSFIEKATAEGTEEVVLDAVGDNFASYNRLKKSNKGRGSMPVSSGAREMASILDTALLQALLLTGQPSVALELLRGVNYCDLKICEEILRKDNHNVALLELYKHNSLHREALELLHKLVDESKSNQSKITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVSSYLKKHSPTMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLDWHAGLCAQQKWDEKDYSPTRKKLLSALETIAGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLNAPELALSYCDRVYESMRQPSAKYSSNIYLVLMQIYLNPRRTTAGFEKRITNLLSPQNKTIPKLTSTPSMRSRARGSKKIAAIEGAEDTKVSLSSTDSGRSDGDADEYSEGSSTTIMLDEVLDLLSRRWDRINGAQALKLLPKETKLQDLLSFLGPLLKKSSEMYRNCSVIKSLRQSENLQVKDELYSQRKTAVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKVVGKGSQLKKRL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0687 989 SUPERFAMILY WD40 repeat-like 26 187 IPR036322 GO:0005515
Vra11g0687 989 MobiDBLite consensus disorder prediction 827 852 - -
Vra11g0687 989 ProSiteProfiles Citron homology (CNH) domain profile. 16 278 IPR001180 -
Vra11g0687 989 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 598 782 IPR000547 GO:0006886|GO:0016192
Vra11g0687 989 PANTHER VACUOLAR SORTING PROTEIN 39 1 988 - -
Vra11g0687 989 Pfam CNH domain 26 273 IPR001180 -
Vra11g0687 989 Pfam Vacuolar sorting protein 39 domain 1 495 603 IPR019452 -
Vra11g0687 989 PANTHER CNH DOMAIN CONTAINING 1 988 IPR032914 GO:0016192
Vra11g0687 989 Pfam Vacuolar sorting protein 39 domain 2 863 971 IPR019453 -
Vra11g0687 989 Pfam Region in Clathrin and VPS 624 753 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0687 Vra-Chr11 5544608 5552165 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0687 K20183 - gmx:100805342 1784.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0687 11 5544608 5552165 Vra11g0687 11 5544608 5552165 ECH