Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0676 ATGAAGTGCCCGTACTGCTCGGCGGCGCAGGGCCGCTGCGCGACAACGAGCAGCGGGCGTTCGATTACGGAGTGCACGTCGTGCGGGCGCGTGATGGAGGAGCGGCAGTCGCATCCTCACCACGTGTTTCACATGCGCGCCCAAGACAACCCTCTGTGTCTGGTTACATCGGATCTCCCTCTTCCTCTCAATCAGAACGAAGACGAGGACCCTTTCGAGCCCACGGGCTTCATCACTGCCTTCTCCACGTGGTCCCTCGAGCCCAGCCCACTTTACCTTCAGTCCTCCCTCTCCTTCTCCGGCCACCTCGCCGAACTTGAACGCACTCTGGAATCCTCCTCTTCCTCTTCCTCTTCTTCTTCATCAACGGTTGTGGTTGATAATCTGAGGGCCTACATGCAGATTATCGATGTAGCGTCAATTCTAGGGTTGGACTGCGACATTTCCGACCACGCTTTTCAGTTGTTCAGGGATTGTTGCTCCGCCACGTGTTTGAGAAACCGCAGTGTAGAGGCGCTTGCTACTGCCGCTCTTGTTCAGGCCATCAGAGAGGCCCAGGAGCCCAGAACCCTTCAGGAAATTTCAATTGCGGCTAATGTACCGCAAAAGGAAATTGGGAAATATATTAAGATACTGGGAGAGGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCCATTTCAGTTCATATGCCAAGATTTTGCACGCTTCTTCAGCTCAATAAATCTGCCCAGGAACTGGCTACTCACATTGGAGAGGTCGTGATCAACAAATGCTTCTGTACTCGCAGGAATCCTATTAGCATCTCAGCTGCTGCCATATATTTGGCTTGCCAACTTGAAGACAAGCGCAAAACCCAGGCAGAAATTTGTAAGGTGACTGGTCTTACTGAAGTCACTCTCCGTAAAGTGTACAAGGAACTATTGGAAAATTGGGATGATTTGCTTCCCTCTAATTACACCCCAGCTGTTCCTCCAGAGAGGGCATTTCCCACAACGATAATTGCTTCTGGCCGTTCTTCAACAGTTAAGGCTGATGTTGTAGAGGCTATTTCTTCTTTGGACTCAGAAAAGTTGACGGATATTAAACCTAGCAAACCCAATGAGGTTTCAGGCCTAGTTCATCAGCCCAAAGGGAAGGATGAGGCTGAAGGTAAAAGCAATGCACATGGAAGCCATTCCACACTGAATCAACAGTCAACTTTTTGGCAATCCCAGCTTCCCAGTGGTACCCACAATCATCAGAATGTTTTACAAGGAATGGATATTGATGTATTGCAGAGAAGCCACCAACAGCCTGAAAACATGGCAGAGGATACAAATGGTTCTGCAAACGGTAATGCGTTAAAATCAAGCCAACTTTGCAGTCCTCCTGCTTCGAGTGCAAGTTCTGTTATGAGACCATTTTCAGCTCCCCCTTCAGCCGGCCCTTCAAATGTTCGATTAGGACAGTCACCTAAGATAATGCCAGGTTATCCGGAGCACTGA 1488 0.4919 MKCPYCSAAQGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHMRAQDNPLCLVTSDLPLPLNQNEDEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGHLAELERTLESSSSSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTIIASGRSSTVKADVVEAISSLDSEKLTDIKPSKPNEVSGLVHQPKGKDEAEGKSNAHGSHSTLNQQSTFWQSQLPSGTHNHQNVLQGMDIDVLQRSHQQPENMAEDTNGSANGNALKSSQLCSPPASSASSVMRPFSAPPSAGPSNVRLGQSPKIMPGYPEH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0676 495 Gene3D - 229 325 - -
Vra11g0676 495 MobiDBLite consensus disorder prediction 430 495 - -
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 175 194 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 201 216 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 230 248 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 264 280 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PRINTS Transcription initiation factor IIB signature 296 310 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 489 IPR000812 GO:0006352|GO:0070897
Vra11g0676 495 MobiDBLite consensus disorder prediction 430 468 - -
Vra11g0676 495 MobiDBLite consensus disorder prediction 359 395 - -
Vra11g0676 495 CDD CYCLIN 131 212 IPR013763 -
Vra11g0676 495 SMART cyclin_7 229 310 IPR013763 -
Vra11g0676 495 SMART cyclin_7 133 214 IPR013763 -
Vra11g0676 495 Gene3D - 129 220 - -
Vra11g0676 495 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 489 - -
Vra11g0676 495 SUPERFAMILY Cyclin-like 227 325 IPR036915 -
Vra11g0676 495 CDD CYCLIN 231 309 IPR013763 -
Vra11g0676 495 Pfam Transcription factor TFIIB repeat 229 310 IPR013150 GO:0017025
Vra11g0676 495 Pfam Transcription factor TFIIB repeat 131 212 IPR013150 GO:0017025
Vra11g0676 495 SUPERFAMILY Cyclin-like 130 220 IPR036915 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0676 K03124 - gmx:102662353 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0676 11 5409784 5412297 Vra11g0676 11 5409784 5412297 ECH