LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0641	ATGCGGATACACTTGAGGTCGTTCTTTTGCGAGGTTAACCTGTTGAACAGGTTAAGCTCGCAAGTGCAAGCTCGTCCATATGGCCGTCGTCGCGAACCGTTTCCCACAAAAGTTTCTCACTACCTCAAACGTGCCAAACTCATTGACTCCATTAGACTCACTCTACGCTCTAAAAACCCCGACTCCTCTCTTCCCTCTCTCACAAACCACCGTCTTTTTGACTCTTTCGTGCTCACTCATGCCATTCGTTCTTCCCCCTCTGCCGATTCCGCTCTTTCCCTTGTTCATGCCCTTGAAAAAAATTCCAATTTTTCCCACACCCACCACACGCTCCATGCACTTGCAACTGTTCTTGCGAAGGCTGGTAGAAGCTCCGCGCTCAAATCCCTCATCGATGATATCCAATCCAACCGATTCGGCACCGTTCGGATCAGCTTCATGAATCTCATGCAGTGGCATGCTGCAGCTGGGGACCTGGACACTGTCCTTCAAGTGTGGGAACAGTATACACTCGAGAGCAACCATCTCTGCACTGAATCATATAATATTGTTATGGCTCTCTATGCTCAAATGGGTAAGGACTCGCAGGCTGTACGAGTTTTTCAGGGGATGATTGATGAAGGGTCTCTGCCGAATTGCAGGAGCTGCACTATAATAATCGAGCACCTTGTGAAGTCCCGGAAGTTATCGGAAGCATTGGAGGTGTTTAATCTGTTGCCTTTGATGAGGATCAAACGCACTTTGAAGCAGTACTCCGTTCTGCTAGAGGGTTTTGTAGGTAGCAAACGGTTTGATGAAGTGAAAATTTTAGTTGATGAAATGCAGGTTGATGGAATACTTCCTAGTAGAGGGGTGAGTTTGTTGCTGCACAAGATGAAAGAGGAAGGAATTCTTGAAGATAAGGAGCAATTACTGCGAGGAATTTTGCCAGATGAGAGAGTCGGTAGTGTAAGTTATTCTGTTGATGGTGGTGACGGGGATGATGATGAGAATGAGAATGAGGTTGAAGACGAGAATATAAATGATGCTAGTCAATGTGATCTTGTTGATGGAGTTCATTTAAAACCATGGCTGGACCCACGGGCTTTGGCCAGTGCCTTGCGGAATTGGAATACTGATGAGGTAGCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACAAGGTTGGTCTGCAAGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGCTGGGTTGCTAATCAAAGTGGATTTACTCATGACATATACACGGTACAAAGAATCATGACCCTACTTGCACGCCATGGACGTACTGACTTGGTTAATACACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAACACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTATGAAGGTTTTCAATGACGATCGAATACTTTGCGGTCCCATATCAAATGTAAACCTGATGCTTTTGTATTCGTCTCTTCTAAGAACATTGACTAAGTGTGGAAGAAACTCCGATGCCTTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGCTCTACTTTTCACAGCTTGGGGACATAAAAACAGTACAAAAGCTCTTTGCAATGATTAGACAGAGTGGTCTAGAGCCAGATGCTTATTTATTTAAGGTATTAATCCAAGGTTATTGCAAGTCAAATAGAGCTGCACTAGCATGGAGGCTCTTTGAAGACATGAAGAATTCTGGTTTAGTGCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGTCTCTGGAAAGAGGGGAGACGAAGAGAGGCTGCAGCAGTAGAAGAGAGTTGTGAGGAAATAAATACGGTTCTTCCACTTGTATTGCAGGGTCATGAATGGACTGTCAGCTCTGCGGATCTCACAAGAGTTTATAATATTTATTCTAATTCTTTTGCTTAA	1983	0.4402	MRIHLRSFFCEVNLLNRLSSQVQARPYGRRREPFPTKVSHYLKRAKLIDSIRLTLRSKNPDSSLPSLTNHRLFDSFVLTHAIRSSPSADSALSLVHALEKNSNFSHTHHTLHALATVLAKAGRSSALKSLIDDIQSNRFGTVRISFMNLMQWHAAAGDLDTVLQVWEQYTLESNHLCTESYNIVMALYAQMGKDSQAVRVFQGMIDEGSLPNCRSCTIIIEHLVKSRKLSEALEVFNLLPLMRIKRTLKQYSVLLEGFVGSKRFDEVKILVDEMQVDGILPSRGVSLLLHKMKEEGILEDKEQLLRGILPDERVGSVSYSVDGGDGDDDENENEVEDENINDASQCDLVDGVHLKPWLDPRALASALRNWNTDEVAALEGANFVWTTRLVCKMLRNFKTPEAAWSFFCWVANQSGFTHDIYTVQRIMTLLARHGRTDLVNTLISKIRMEGMRLPFNTIRLIIDFYGISKNADAAMKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMLYFSQLGDIKTVQKLFAMIRQSGLEPDAYLFKVLIQGYCKSNRAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESCEEINTVLPLVLQGHEWTVSSADLTRVYNIYSNSFA*	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0641	660	PANTHER	OS01G0167750 PROTEIN	5	659	IPR044175	-
	Vra11g0641	660	MobiDBLite	consensus disorder prediction	316	336	-	-
	Vra11g0641	660	Gene3D	Tetratricopeptide repeat domain	492	652	IPR011990	GO:0005515
	Vra11g0641	660	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	177	211	IPR002885	-
	Vra11g0641	660	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	247	281	IPR002885	-
	Vra11g0641	660	TIGRFAM	PPR: pentatricopeptide repeat domain	567	599	IPR002885	-
	Vra11g0641	660	TIGRFAM	PPR: pentatricopeptide repeat domain	497	529	IPR002885	-
	Vra11g0641	660	TIGRFAM	PPR: pentatricopeptide repeat domain	180	213	IPR002885	-
	Vra11g0641	660	Pfam	PPR repeat	180	208	IPR002885	-
	Vra11g0641	660	Pfam	PPR repeat	497	525	IPR002885	-
	Vra11g0641	660	Pfam	PPR repeat	251	279	IPR002885	-
	Vra11g0641	660	Pfam	PPR repeat	215	238	IPR002885	-
	Vra11g0641	660	Gene3D	Tetratricopeptide repeat domain	379	487	IPR011990	GO:0005515
	Vra11g0641	660	Gene3D	Tetratricopeptide repeat domain	173	306	IPR011990	GO:0005515
	Vra11g0641	660	Gene3D	Tetratricopeptide repeat domain	61	172	IPR011990	GO:0005515
	Vra11g0641	660	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	528	562	IPR002885	-
	Vra11g0641	660	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	493	527	IPR002885	-
	Vra11g0641	660	Pfam	PPR repeat family	562	609	IPR002885	-
	Vra11g0641	660	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	563	597	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0641	500	633	Glycosyltransferase	AT1G05670	25.735	3.39e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0641	-		-	gmx:100779372	1067.76

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra11g0641	11	5130296	5134305	Vra11g0641	11	5130296	5134305	ECH