Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0623 ATGGGAACGATGACAGGATTGTTCGAGGAAGGAAGCTCCCATGGAAAAAAGTATGGAAAGTTAAACAAAGACGAATTCGATGGTTATAACTCTGATAACCATCTAAGAAAAAATAGCCCTGTCACGTTGGACGCACCTCATTTGGATCCTCAAATGGCAATAGATCACACTGCTTACGACCCTTCTCTTTCTCCCTTATCGAAATCGCCATGGTCCTCTCACATGAACGAAGAAGGTTCCACCTCCAACGACAACGAGGCTCTGATAGGGTCCTTAGTCCGAGAAGAGGGTCACATATACTCCCTGGCTGCAACCAAAGACTTGTTATACACGGGTTCAGAGAGTAAAAATATTCGCGTGTGGAAGAACCAAAAGGAGTTCACGGGGTTCAAATGCCACAGCGGCTTGGTGAAAGCGATCGTGATCGCCGGGGAAAAAATCCTCACGGGACACCAAGATGGAAGGATAAGAGTGTGGAAAGTTTCGGGGAAAAACGACCAACAACACAAGCGTGTGGCAACGTTGCCCACGTTAAGAAACTACATAAAATGTTCGGTGAAACCAAGTAATTACGTGGAAGTGAAACGGCACCGTAACGTGTTGTGGATTAAACACTACGACGCCATTTCATGTCTGGCCGTGACAGAGGATCATTCTTATATATACTCTGCCTCGTGGGATAGAACTTTCAAAGTGTGGAGAGCGTCCAGTTTCAAGTGTCTAGAGTCTGTGATAGCCCATGAGGATGCTGTTAATGCGCTTGTTGTGGGGTTGGATGACTTGGTTTTCACGGGCTCAGCTGACGGCTCGGTTAAGATTTGGCGGCGGGAGGTTCACGGGAAAAGGACAAAACATTTTTTCTCGCACACGTTGTTGAAGCAAGAGTGTGCGGTGACGGCGCTGACGATGAGCGGCGAGGGGAATTTTTTATACGCCGGTTCTTCCGATGGGTTGGTGAATTATTGGGTGAGAGAGACAAATTGGGAGCACAGGGGGACGTTAAGGGGGCACAAGTTGGCCATTTTGTGTTTGGCTGCTGCAGGAAGTTTGATCTTCAGTGGGTCTGCTGACATGTCCATATGCGTGTGGAAGAGGTCACTGAGTCAGGAGCACACGTGTGTTAATGTTTTGTCCGGCCACTGTGGCCCGGTTAAGTGTCTGGCGGCGGAGAGGGATCTCGACGGCATGTGCAACGAGCGACGGTGGATTTTGTACAGTGGTAGTTTGGATAAGTCCGTTAAGATGTGGAAGGTCTCCGAGAATTCAACTGCACAACACAACCACCAACCACCACGGCATAGTGTTGATCACTTCCCTATAGTTTCATCGTTGAAGAGAGTGGGGTCCAAGAGATTCTAG 1359 0.4849 MGTMTGLFEEGSSHGKKYGKLNKDEFDGYNSDNHLRKNSPVTLDAPHLDPQMAIDHTAYDPSLSPLSKSPWSSHMNEEGSTSNDNEALIGSLVREEGHIYSLAATKDLLYTGSESKNIRVWKNQKEFTGFKCHSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNDQQHKRVATLPTLRNYIKCSVKPSNYVEVKRHRNVLWIKHYDAISCLAVTEDHSYIYSASWDRTFKVWRASSFKCLESVIAHEDAVNALVVGLDDLVFTGSADGSVKIWRREVHGKRTKHFFSHTLLKQECAVTALTMSGEGNFLYAGSSDGLVNYWVRETNWEHRGTLRGHKLAILCLAAAGSLIFSGSADMSICVWKRSLSQEHTCVNVLSGHCGPVKCLAAERDLDGMCNERRWILYSGSLDKSVKMWKVSENSTAQHNHQPPRHSVDHFPIVSSLKRVGSKRF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0623 452 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Vra11g0623 452 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Vra11g0623 452 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 364 IPR001680 GO:0005515
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 322 IPR001680 GO:0005515
Vra11g0623 452 MobiDBLite consensus disorder prediction 65 84 - -
Vra11g0623 452 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 430 IPR045182 -
Vra11g0623 452 Gene3D - 288 440 IPR015943 GO:0005515
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 169 IPR001680 GO:0005515
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 274 IPR001680 GO:0005515
Vra11g0623 452 Pfam WD domain, G-beta repeat 330 364 IPR001680 GO:0005515
Vra11g0623 452 Pfam WD domain, G-beta repeat 205 233 IPR001680 GO:0005515
Vra11g0623 452 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Vra11g0623 452 Pfam WD domain, G-beta repeat 372 417 IPR001680 GO:0005515
Vra11g0623 452 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 274 - -
Vra11g0623 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Vra11g0623 452 SUPERFAMILY WD40 repeat-like 93 426 IPR036322 GO:0005515
Vra11g0623 452 SMART WD40_4 327 364 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 196 234 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 279 323 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 370 417 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 123 160 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 85 122 IPR001680 GO:0005515
Vra11g0623 452 SMART WD40_4 237 275 IPR001680 GO:0005515
Vra11g0623 452 Gene3D - 55 193 IPR015943 GO:0005515
Vra11g0623 452 CDD WD40 96 417 - -
Vra11g0623 452 Gene3D - 194 287 IPR015943 GO:0005515
Vra11g0623 452 PANTHER BNAANNG11810D PROTEIN 8 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0623 Vra-Chr11 4936695 4938512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0623 241 419 Miscellaneous Gene Families AT5G08390 26.230 1.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0623 - - gmx:100778593 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0623 11 4936695 4938512 Vra11g0623 11 4936695 4938512 ECH