Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0445 ATGAGTTCTCTGACCGGACTTGCTCCACTTGAAGCTGTGCTCTTTGATGTAGATGGAACACTATGTGACTCTGATCCACTCCACTACGAAGCTTTGCGTGAAATGCTACTAAAGATTGGTTTTAATGGAGGTGTTCCTATAACGGAGGAATTTTTTGTTGAAAAATTTTCTGGCAAGTACAAAGTTGATGCTGCCTCAGTTGCCTTTCCTGATGATCCGGAACGAGGTTTGAAGTTTATAGAAGATAAGGAAGCCATGTTCCGAAGATTGGCGAGACAGCAACTGAAGCCAGTGAAAGGCCTTGATAGAGTGAGGACATGGGTTGAAAACCGTGGTCTGAAGAGAGCTGCAGTTACCAATTCTCCAAGAGAAAATGCAGAACTCATGATCTCAAAACTTGGTCTCTCGGACTTCTTTGATGTTCTTATTATTGGTGATGAATGTGAACGTGGTAAACCTCATCCCGACCCCTACTTGAAAGCTCTTGAAGTTCTGAAGGCATCGAAGGATCATGCATTTGTATTTGAGGATTCTTTTTCAGGGATTATAGCTGGAGTGGCAGCTGGGATGCCTGTTATTGGCCTAGCTACACGAAACCCAGAGGATTTACTTATGAAAGCAAAGCCAGCTTTTCTGATTAACGATTATGAGGATCCAAAATTGTGGGCAGCTTTAGAAGAATTTGACAAGCCTGCCGCCTAA 702 0.4316 MSSLTGLAPLEAVLFDVDGTLCDSDPLHYEALREMLLKIGFNGGVPITEEFFVEKFSGKYKVDAASVAFPDDPERGLKFIEDKEAMFRRLARQQLKPVKGLDRVRTWVENRGLKRAAVTNSPRENAELMISKLGLSDFFDVLIIGDECERGKPHPDPYLKALEVLKASKDHAFVFEDSFSGIIAGVAAGMPVIGLATRNPEDLLMKAKPAFLINDYEDPKLWAALEEFDKPAA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0445 233 Pfam Haloacid dehalogenase-like hydrolase 13 194 IPR041492 -
Vra11g0445 233 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 2 231 - -
Vra11g0445 233 SUPERFAMILY HAD-like 9 227 IPR036412 -
Vra11g0445 233 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 2 231 - -
Vra11g0445 233 SFLD Haloacid Dehalogenase 10 218 - -
Vra11g0445 233 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 194 IPR006439 -
Vra11g0445 233 Gene3D - 11 219 IPR023214 -
Vra11g0445 233 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 10 218 - -
Vra11g0445 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 10 21 IPR006439 -
Vra11g0445 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 108 121 IPR006439 -
Vra11g0445 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 139 155 IPR006439 -
Vra11g0445 233 Gene3D Putative phosphatase; domain 2 25 93 IPR023198 -
Vra11g0445 233 CDD HAD_BPGM-like 12 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0445 Vra-Chr11 3302928 3304322 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0445 - - vra:106773023 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0445 11 3302928 3304322 Vra11g0445 11 3302928 3304322 ECH