Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0443 ATGGCGCCAGTATCAGCTCTTGCAAAGTACAAACTGGTGTTTTTAGGTGATCAGTCTGTGGGAAAAACCAGTATCATCACACGTTTCATGTATGACAAATTTGACAACACTTATCAGGCCACGATTGGTATTGATTTTTTATCAAAAACTATGTATCTTGAAGACCGAACTGTTCGGCTGCAGCTGTGGGATACAGCTGGTCAAGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGCTTATGATGTTGCAAGTCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAATGATGTTATTATTGTACTTGTGGGGAACAAAACTGATCTTGTGGATAAGAGGCAAGTCTCAACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTAAATGTGATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTCAATATAAAGGCCCTCTTCAGAAAAATTGCTGCAGCATTGCCTGGAATGGAAACACTATCTTCCACAAAACAAGATGACATGGTTGATGTGAACCTGAGATCTTCTGCTGGTCATGACTCTCAACCTGATTCAGGAGGATGTGCTTGCTGA 621 0.4187 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTSKWIEEVRSERGNDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQDDMVDVNLRSSAGHDSQPDSGGCAC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0443 206 PANTHER GTP-BINDING PROTEIN RAB6 1 206 - -
Vra11g0443 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Vra11g0443 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Vra11g0443 206 CDD Rab6 10 170 - -
Vra11g0443 206 Gene3D - 6 199 IPR027417 -
Vra11g0443 206 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Vra11g0443 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Vra11g0443 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Vra11g0443 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Vra11g0443 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Vra11g0443 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Vra11g0443 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 179 IPR027417 -
Vra11g0443 206 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Vra11g0443 206 SMART ran_sub_2 15 206 - -
Vra11g0443 206 PANTHER DRAB5-RELATED 1 206 - -
Vra11g0443 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Vra11g0443 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
Vra11g0443 206 SMART ras_sub_4 7 173 - -
Vra11g0443 206 SMART rab_sub_5 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0443 Vra-Chr11 3285982 3288922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0443 K07893 - gmx:100790511 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0443 11 3285982 3288922 Vra11g0443 11 3285982 3288922 ECH