Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0438 ATGGACTCGCAACAGAGCAATCTATTCGACACCGCTTCGCAGCCCGACACCGGCAACGACGCCTACACCTTTCTTGAATTTAACACACAGGGCGAGGATTTCGACTACCCTGAATTCCGCGACCCGATTAGGTCGCCGGTAGCATGGCCAACTCCGTCCGATTCGCTTGCGGACACGTCTGACCGCGGCGCCGTTGGGGGACCTGGCTCCGATCACCAGTCAGATGCCTCGCCTGTCTCCGCGGCTCCTGGAAGCGCTACCAAGGGCGGCCGGTCGGGGAACGGCGGTGGGCACAGCAGCCAGATGGTGGATGCGCTTGCCGCGGGGATGAGCGGGTTGAATTTTGAGGACACTGGGGATGATGATAACTATGAGTATGGTAAAGGAGATTTCACTGAACACGCTTGCCGTTACTGCGGGGTTTCCAATCCCGCTTGTGTTGTGAGGTGCAATGTACCTTCGTGTCGTAAGTGGTTCTGTAATTCACGGGGGAACACTTCTGGATCACATATTGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGCAATGTTTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTGGTCTTACTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGAGCTCGCCAAATAAGTGCACAACAAATAAATAAGGTGGAGGAATTGTGGAAGACAAATCCTGATGCTTCTTTTGAAGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGACAAGATGATGAAAGAATCACAAAGTAAGGACAATGTCACTATTCGATGGGATATTGGTCTTAACAAGAAGCGTGTTGCCTATTTTGTATTTCCAAAGGAGGACAATGAGTTGCGGCTTGTACCTGGTGATGAGTTACGACTCCGATATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCATTGGAGCTCCGTGCTAGTCAGGGTGTTCCTGTTGATGTTAACCATGGGTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACTTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTATCATCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGAAATGCTTTGCCTCGTCGCTTTGGTGCACCTGGCCTTCCCGAGCTGAATGCATCTCAGGTCTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATAAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAATCAAGGGAAGCTGTCAGTTCTCCTGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTGCAACAGCTGAAGGATGAGCAAGGTGAACTTTCCAGCAGCGATGAGAAAAAATACAAAGCTCTTAAGCGAGCAACTGAGAGGGAGATTTCTCAGAGTGCAGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTAGCGAATTTTAGGTTCCGCCAGGTTCTTATTGATGAGTCTACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTCCTAGGAGCAAAGCAGGTTGTTCTTGTTGGCGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGATTAGCTCAGTCACTTTTTGAGCGACTTGTTCTGCTTGGTGTTAAGCCAATTAGGTTGCAGGTTCAGTACCGAATGCATCCATGTCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATCATCAGGAATCGATTTTCCATGGCCAGTTCCAAACCGTCCTATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCGTATGAAGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCTTTTCAAGGAAGGGAAAAAGATTACATAATTCTTTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGGTTCCTAAATGATCCCAGGAGGCTCAACGTTGCCTTGACTCGAGCAAGATATGGTATTGTTATTTTGGGTAACCCTAAAGTTTTGAGCAAGCAACCTCTGTGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGCTTAGTTGAAGGGCCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTTCAGAAACCCAAAAAGATTTATAATGAACGAAGGCTTTTTTACGGAGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGATCTGGAGCTGGAACAAGTTCAGATCGGAGGAGTAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGCCAAGAGTTCCCTTGCCTCCCTTCCATGGTGGTCCCCAGTCTCAACCATATGCCATTCCTTCACGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCTGGGAGTCGAGGCTTTGGGGCTGGTAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACCCAACAGCCGATTGGGAATATTGGATCTACCTTTAACTTCCCTACTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCTTTATCTCAACCTGGGTTTGCAAACAATATGCCAGTTCAAGGGGCTGGCCAGTCATTTCGAGACCAATTTTCTATGCCTGGAATGTCGCAGGACTTTTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTACAATGTCACCGACTTCTCTACTCAGGCTTCTCAAAGTGGATATGCTGTTGATTTTTCTACACAAGGAGCACAAGGTGGATTCCCTGGAAATTTTCTTAACCAGAATTCTCAAGCTGGCTATTCTCGTTTTGGTTCTGGAAACGACTTTATGTCCCAGGACTACATGGGCCATGGTTCTCAAGGTCTTTTTACTCAGGTGGGATTCAATGACCCGTTGCAAGATGATTCAACTCAAAGCCATTTCGGTGTGGCTAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTCTACTCCCAACCATTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTTCGCAACAGCAGTCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGGTTGA 3807 0.4592 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADTSDRGAVGGPGSDHQSDASPVSAAPGSATKGGRSGNGGGHSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPTLENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDFSTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFNDPLQDDSTQSHFGVANANPLQSQMNSLYSQPFAHYNTQPLNMQASQQQSQAQNSQNQKIHYNG* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0438 1268 Gene3D - 719 930 IPR027417 -
Vra11g0438 1268 Gene3D - 570 622 - -
Vra11g0438 1268 CDD SF1_C_Upf1 720 909 IPR041679 -
Vra11g0438 1268 MobiDBLite consensus disorder prediction 1 101 - -
Vra11g0438 1268 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 110 1036 - -
Vra11g0438 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 943 IPR027417 -
Vra11g0438 1268 Pfam AAA domain 697 892 IPR041679 -
Vra11g0438 1268 Pfam AAA domain 584 687 IPR041677 GO:0004386
Vra11g0438 1268 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vra11g0438 1268 MobiDBLite consensus disorder prediction 995 1011 - -
Vra11g0438 1268 MobiDBLite consensus disorder prediction 957 972 - -
Vra11g0438 1268 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vra11g0438 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Vra11g0438 1268 MobiDBLite consensus disorder prediction 1053 1090 - -
Vra11g0438 1268 CDD 1B_UPF1-like 340 427 IPR040812 -
Vra11g0438 1268 Pfam Type III restriction enzyme, res subunit 490 552 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vra11g0438 1268 MobiDBLite consensus disorder prediction 1 26 - -
Vra11g0438 1268 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Vra11g0438 1268 CDD DEXXQc_UPF1 484 719 - -
Vra11g0438 1268 Gene3D - 340 428 - -
Vra11g0438 1268 MobiDBLite consensus disorder prediction 1247 1268 - -
Vra11g0438 1268 Gene3D - 448 718 IPR027417 -
Vra11g0438 1268 MobiDBLite consensus disorder prediction 953 1090 - -
Vra11g0438 1268 PANTHER DNA2/NAM7 HELICASE FAMILY 110 1036 IPR045055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0438 Vra-Chr11 3249874 3261320 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0438 K14326 - gmx:100795594 2471.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0438 11 3249874 3261320 Vra11g0438 11 3249874 3261320 ECH