Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0431 ATGGCTCTAACACTTCGTTCTTCGGTTTCCCTCGTCAACCAGAAAGAAACCAGACTCCCAAAACCCAAAGAAGACGTTTCCACAAAAGTTTCTTACCTCGGAAAAACGAAAGTAAACCAATCTTTCCGTCTCCGAATCAAGAGTTCCATGCAACAAACACATGTCACAGGAGACAACAGCAGCAAAAACTTCAACGCCCAAGTGACGATGAAAAATGAGAAAAGGGAGAAGCTTCACGCGCCGTTGGTTGGTCATAGTCATAATGATTCGATGAGAGTGCCGGTGTTTGTGATGCTGCCATTGGACACTGTAACAATGGGGGGCACTTTGAATAAGCCGAGAGCGATGAATGCTAGTTTGATGGCTTTGAAAAGTGCAGGAGTTGAAGGAGTGATGGTGGATGCTTGGTGGGGTTTGGTGGAAAGAGAAGAACCCTTGAAGTATAACTGGGAAGGCTATGCTGAACTTGTGCAAATGGTTCAAAGGCATGGCTTGAAGCTTCAGGTTGTCATGTCTTTCCATCAATGTGGTGGAAATGTCGGAGACTCCTGCAGTATTCCTCTGCCTCAGTGGGTGCTGGAAGAAATCAGCAAGAACCCTGAACTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAATACATATCCTTGGGCTGTGATTCAATGCCTGTTCTTCGGGGAAGGACACCCATTCAAGTGTACTCTGATTACATGAGGAGCTTCCGTGATAGATTCAGAGACTATTTGGGCAGTGTTATCATGGAAATTCAAGTGGGAATGGGTCCTTGTGGGGAGCTAAGATATCCATCTTATCCTGAAAGCAATGGAACTTGGAAGTTTCCTGGCATTGGAGAATTCCAGTGCTACGACAAGTATATGAGAGGTTCCTTGGAAGCATCAGCTGAGGCCATTGGGAAGAAAGATTGGGGAAGAAGTGGACCCCATGATTCTGGCCAGTACAACAATTTTCCCGAAGAAACTGGATTTTTTCGTAGGGAAGGAACATGGAACTCAGAATACGGACAATTCTTCCTTGATTGGTACTCCACCAAGCTTGTTGAACACGGTGAGAGAATCCTTGCATCAGCCAAAGGCATATTCAACTCGCGTGGGGTGAAATTATCTGCCAAAGTTGCTGGAATTCATTGGCACTACAAGGCAAGGTCACATGCAGCAGAACTAACAGCAGGCTACTACAACACTCGGTTTCATGATGGGTACCTAGCAATAGCAGAAATGCTGGCAAAGCATGGTGCAGTGTTCAACTTCACCTGCATGGAAATGAGGGACAAAGAACAATCCGAGCATGCTAGTAGCTCCCCAGAGGGCTTGGTTCATCAAGTGAAGATGGCAACCAGAAGAGCAGGAGCAGAACTTGCTGGGGAAAATGCTCTTGAGAGATATGACGCAGCTGCATTTTCTCAAGTTTTGGCAACAAGTGACTCTGGTTCTGGATTGTCTGCATTTACTTTTCTCAGAGTGAACAAGAACTTGTTCGAGGGAGAAAATTGGAGGCACTTTGTGGAGTTTGTGAAAAGCATGTCAGAGGGTGGTAGGAGACAAAGCCTTCCACTTTCTGATTCCTGCGGCACTCATCTTTACGTTGGACACATCACAGGATTTAAGAAGCAGCAAGAGCAGGCTCAACATGTTGCTCTCGTCTGA 1668 0.461 MALTLRSSVSLVNQKETRLPKPKEDVSTKVSYLGKTKVNQSFRLRIKSSMQQTHVTGDNSSKNFNAQVTMKNEKREKLHAPLVGHSHNDSMRVPVFVMLPLDTVTMGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEREEPLKYNWEGYAELVQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPQWVLEEISKNPELVYTDRSGRRNPEYISLGCDSMPVLRGRTPIQVYSDYMRSFRDRFRDYLGSVIMEIQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMRGSLEASAEAIGKKDWGRSGPHDSGQYNNFPEETGFFRREGTWNSEYGQFFLDWYSTKLVEHGERILASAKGIFNSRGVKLSAKVAGIHWHYKARSHAAELTAGYYNTRFHDGYLAIAEMLAKHGAVFNFTCMEMRDKEQSEHASSSPEGLVHQVKMATRRAGAELAGENALERYDAAAFSQVLATSDSGSGLSAFTFLRVNKNLFEGENWRHFVEFVKSMSEGGRRQSLPLSDSCGTHLYVGHITGFKKQQEQAQHVALV* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 127 141 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 148 166 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 170 191 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 262 284 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 337 356 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 373 389 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 390 401 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 408 431 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 445 467 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 PANTHER - 1 555 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 MobiDBLite consensus disorder prediction 1 15 - -
Vra11g0431 555 Pfam Glycosyl hydrolase family 14 96 511 IPR001554 GO:0000272|GO:0016161
Vra11g0431 555 ProSitePatterns Beta-amylase active site 1. 174 182 IPR018238 GO:0000272|GO:0016161
Vra11g0431 555 PANTHER BETA-AMYLASE 1 555 - -
Vra11g0431 555 SUPERFAMILY (Trans)glycosidases 92 518 IPR017853 -
Vra11g0431 555 MobiDBLite consensus disorder prediction 1 23 - -
Vra11g0431 555 Gene3D Glycosidases 84 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0431 Vra-Chr11 3123221 3125888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0431 1 555 Glycoside Hydrolase AT4G17090 68.761 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0431 K01177 - gmx:100786079 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0431 11 3123221 3125888 Vra11g0431 11 3123221 3125888 ECH