Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0426 ATGGGTTGTTTCCACTCCAAAGTAAGGGAAATTCCCATGGAAGATCCGTTTGCTCTTGCGTCAGAGACAGCTTTTAGTGTTAGTGATGTTGAAGCACTATATGAGCTGTTTAAGAACATTAGCAGGTCAGTCACTGATGATGGTCTGATAAGCAAGGAGGAATTTCAACTGGCAATTTTTAATAATAAGAAGAAGGAAAACCTCTTTACGAGTCGGATCTTTGATTTATTTGATGTCAAGAAGAAAGGAGTGATTGACTTTGGTGATTTCGTTAGAGCACTCAATGTTTTTCACCCATCTGCACCAATGGAAGTCAAAATAGAATTTTCGTTTAAGCTGTACGATCTAGATAACACAGGATTTATAGAGCGTCATGAGGTGAAGCAAATGATAAATGCACTTCTATGTGAAGCGGAAATTAAGTTATCAGAGGAAACGATAGAAACAATTATCAACAAGACTTTCATGGATGCTGACCCTAATCAAGATGGGAAAATAGACAAATATGAGTGGAAAAACTTCGTTTATGAAAATCCTTCATTGTTGAAAGTTATGACGTTACCCTACTTGAGGGACGTGACCACTGCTTTTCCAAGTTTTGTGTTTCATTCAAAGGTGGAGGATGAAATTGCAGAATGA 639 0.3756 MGCFHSKVREIPMEDPFALASETAFSVSDVEALYELFKNISRSVTDDGLISKEEFQLAIFNNKKKENLFTSRIFDLFDVKKKGVIDFGDFVRALNVFHPSAPMEVKIEFSFKLYDLDNTGFIERHEVKQMINALLCEAEIKLSEETIETIINKTFMDADPNQDGKIDKYEWKNFVYENPSLLKVMTLPYLRDVTTAFPSFVFHSKVEDEIAE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0426 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Vra11g0426 212 SUPERFAMILY EF-hand 19 200 IPR011992 -
Vra11g0426 212 PRINTS Recoverin family signature 73 94 - -
Vra11g0426 212 PRINTS Recoverin family signature 120 138 - -
Vra11g0426 212 PRINTS Recoverin family signature 166 186 - -
Vra11g0426 212 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Vra11g0426 212 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vra11g0426 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Vra11g0426 212 Pfam EF-hand domain pair 106 174 IPR002048 GO:0005509
Vra11g0426 212 SMART efh_1 69 97 IPR002048 GO:0005509
Vra11g0426 212 SMART efh_1 106 134 IPR002048 GO:0005509
Vra11g0426 212 SMART efh_1 150 178 IPR002048 GO:0005509
Vra11g0426 212 CDD EFh 106 175 IPR002048 GO:0005509
Vra11g0426 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Vra11g0426 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Vra11g0426 212 PANTHER CALCINEURIN B-LIKE PROTEIN 1 212 - -
Vra11g0426 212 Gene3D - 15 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0426 Vra-Chr11 3088307 3090966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0426 1 211 EF-hand Containing Proteins AT4G17615 72.300 4.65e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0426 K06268 - gmx:100779020 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0426 11 3088307 3090966 Vra11g0426 11 3088307 3090966 ECH
Vra11g0426 11 3088307 3090966 Vra7g1324 7 30121024 30125116 PCT