Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0405 ATGGCTTCTTCTGCTAAAAGGTGGCTTCCGCTCGAAGCAAACCCTGAAGTCATGAATCAGTTCCTTTGGGGACTTGGGCTTGGAGAGGACGAGGCAGAATGCTGTGACGTTTATGGCTTAGATGAAGAGCTTCTGCAAATGGTTCCTAACCCCGTTCTTGCCGTTCTTTTTCTTTATCCCATAACCACCCAGAGTGAAGAAGAAAGGTTGCAGCAGGAAAAGGAAAAAAAGGAATATAGCAATAGAGTGTATTTTATGAAGCAAACTGTGGGTAATGCTTGTGGAACAATTGGACTGCTTCATGCTCTTGGCAACTTGACTTCGGAAGTCAAGTTGGTTGAGGGGTCTTTCTTTAATAACTTCTTTAAATCCACTGCAAGCATGGATCCACTGCAGCGTGCTAAATTTCTGGAGAATGACAGAGAAATGGAAGTTGCTCATTCAGTGGCAGCGACTGCTGGTGATACAGAGGCATCTGACAATGCTGATGCACATTTCATATGCTTTGTCTGTGTTGATGATGAACTTTATGAGCTTGATGGAAGAAAATCGTGGCCAATATCTCATGGTCCATGTTCACCGAGTACTTTGTTGAGGGATGCAGCTAAGGTGATACAGAGCATGATCCAGAAAAATCCGGAGTCCTTCAACTTCAATGTCATCGCCTTATATAAGAAATCCGGGTAG 687 0.4381 MASSAKRWLPLEANPEVMNQFLWGLGLGEDEAECCDVYGLDEELLQMVPNPVLAVLFLYPITTQSEEERLQQEKEKKEYSNRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFNNFFKSTASMDPLQRAKFLENDREMEVAHSVAATAGDTEASDNADAHFICFVCVDDELYELDGRKSWPISHGPCSPSTLLRDAAKVIQSMIQKNPESFNFNVIALYKKSG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0405 228 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 226 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 226 - -
Vra11g0405 228 Coils Coil 62 82 - -
Vra11g0405 228 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 10 27 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 48 60 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 88 105 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 160 171 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 176 186 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 8 209 IPR001578 GO:0004843|GO:0006511
Vra11g0405 228 SUPERFAMILY Cysteine proteinases 6 226 IPR038765 -
Vra11g0405 228 CDD Peptidase_C12_UCH_L1_L3 8 223 - -
Vra11g0405 228 Gene3D - 2 226 IPR036959 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0405 Vra-Chr11 2950093 2952902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0405 K05609 - gmx:100527755 411.764