Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0362 ATGATTCATTTTGAGCATCGTAGGCCATCCACAAGTAGTGGTAAAGTTTTTACGGTTAAAAGAAATGGCCATCGATTACGGTTTTCAATCGTGAGAGTAGCGTTGTGCTGTTTACATATGAGAAGTCCGAAGGCAGAGTCCGACGACAGGGACGTGACCATAGCGAGAGGTGAAGGAGAAGATGAATTGCTTCCTGGTTTTCAGGGATTGAAGTTTGACAGTGGAAGTGGTAGTGGTAAGAAAAAAAAAAGTATTCACCCTCCGATTGAAACGCATTGGGATCCGCATTCATCCACGTCTGGGAAAAAGTCTAATTCGTCACCTATCAAGTCACTCTTGTCATTGTCATTCCCGTTCATGAAATTTAGGAGGAGTAAAAGCCTTGTAATGATTCTAGAAGGAGCTCGTGATCCCAAGGATAAACAAATTGTCGAGTCTTTTCGCGAAATGCTTTTACAAGAATCTCTCTTGCCACCTAAGCACGATGATTATCACACTCTTCTGAGGTTTCTGCGCATGAGGGATTTCGACATGTCAAAATCCAAAGAAATGTTCCAAAATTATCTCAATTGGCGCAAGGAATTTCGAGTAGACCAGCTTCCAAAGGAATTCAATTTCACGGAGTACAATGAAGTGAAGAGCTGCTATCCTCATGGATACCACGGAGTTGATAGATATGGAAGACCCTTGTATATTGAGAGAATTGGAATGGTAGACCTTAACAAACTGGGCCAAGTTACGACATTTGAAAGGTTTATCAAACATCATGTGTTAGAACAAGAGAAAACTCTCAAACTAAGATACCCTGCATGTTCTCTAGCGGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAAGCCCGCAAGGTACCTCTTCATGGAAATTCAGAAGATCGATAGCTGTTACTATCCTGAGACCCTAAATAAGCTATTTATTATTAATGCCGGATCTGGGTTTAAGATGCTGTGGAAAGCGGTAAAGACATTTCTAGATGAACGCACAGTAGCAAAAATTCAGGTGTTGGGCTCTAATTATCTCAGCGTGCTGCTTGAGGCTATCGAGCCGAGTAATTTGCCAACTTTTCTGGGTGGTAACTGCACATGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGCTGGAAATGATTCAGGCTGTTAACTTGAGAGAAGAGATCGATGGTAAATGCGAGGATGTTGAGGTGGCTACAGAAGATTCCTCGATGCCTAAAAAGGTTGAGATGCAGACCAAAGATGGCGATAACACTTTGAGTCTGCTTGAGGAGACAGTGTGCGCGGGGTCAGACTCTGCATGTACTTGTAGGTTAGCAATGCAAAAAATTGATTGTCTTGAAGCTACTGTTGGAGACATACAGAATAAAATCAAGACGCTGGAAGATGCACTCCAAAAGAGCATTGTGCCATTGAAAGAACAAGATTCGGATCAACCAGCAGTTTAA 1518 0.4236 MIHFEHRRPSTSSGKVFTVKRNGHRLRFSIVRVALCCLHMRSPKAESDDRDVTIARGEGEDELLPGFQGLKFDSGSGSGKKKKSIHPPIETHWDPHSSTSGKKSNSSPIKSLLSLSFPFMKFRRSKSLVMILEGARDPKDKQIVESFREMLLQESLLPPKHDDYHTLLRFLRMRDFDMSKSKEMFQNYLNWRKEFRVDQLPKEFNFTEYNEVKSCYPHGYHGVDRYGRPLYIERIGMVDLNKLGQVTTFERFIKHHVLEQEKTLKLRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYLFMEIQKIDSCYYPETLNKLFIINAGSGFKMLWKAVKTFLDERTVAKIQVLGSNYLSVLLEAIEPSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQAVNLREEIDGKCEDVEVATEDSSMPKKVEMQTKDGDNTLSLLEETVCAGSDSACTCRLAMQKIDCLEATVGDIQNKIKTLEDALQKSIVPLKEQDSDQPAV* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0362 505 Gene3D - 196 408 IPR036865 -
Vra11g0362 505 Gene3D - 131 195 - -
Vra11g0362 505 SUPERFAMILY CRAL/TRIO N-terminal domain 136 203 IPR036273 -
Vra11g0362 505 SMART sec14_4 208 379 IPR001251 -
Vra11g0362 505 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 78 497 - -
Vra11g0362 505 MobiDBLite consensus disorder prediction 93 108 - -
Vra11g0362 505 MobiDBLite consensus disorder prediction 76 90 - -
Vra11g0362 505 CDD SEC14 206 377 IPR001251 -
Vra11g0362 505 SMART CRAL_TRIO_N_2 163 188 IPR011074 -
Vra11g0362 505 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 78 497 - -
Vra11g0362 505 Pfam CRAL/TRIO domain 216 376 IPR001251 -
Vra11g0362 505 PRINTS Cellular retinaldehyde-binding protein signature 166 188 - -
Vra11g0362 505 PRINTS Cellular retinaldehyde-binding protein signature 335 354 - -
Vra11g0362 505 PRINTS Cellular retinaldehyde-binding protein signature 368 377 - -
Vra11g0362 505 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 208 382 IPR001251 -
Vra11g0362 505 SUPERFAMILY CRAL/TRIO domain 209 403 IPR036865 -
Vra11g0362 505 Coils Coil 467 487 - -
Vra11g0362 505 MobiDBLite consensus disorder prediction 65 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0362 Vra-Chr11 2625834 2629896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0362 141 373 Acyl Lipid Metabolism Gene Families AT5G47730 28.099 1.52e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0362 - - vun:114174105 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0362 11 2625834 2629896 Vra11g0362 11 2625834 2629896 ECH