Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0358 ATGGCAATGCACAAGAGCAGTTCCGGTTCAGCATTGGGTCCAGGAGGCTTAGACCTAACTCAAGCCTTCTTTAAGTCCGTCATGAACGCTGCACCTTCTTCTCCCACAAAGCGCCACACCAAAATCTCCGTTATTGGTGCCGGAAACGTCGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTCCTCGTCGATGCCATTCCTGATAAACTCCGCGGCGAGATGCTCGATCTCCAGCACGCCGCCGCCTTCCTACCCCGCACCAGAATTCAGGCCTCAACCGACTACTCCATCACTGCAGGTTCCGACCTCTGCATTGTCACCGCCGGTGCCCGCCAAATCCACGGCGAGTCCAGGCTGAACCTCCTACAAAGGAACGTCACCCTCTTTCAGAAAATCATACCCCCTTTGGTTCGTTACTCTCCCGACACCATTCTCCTTATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAACTCTCTGGTTTCCCTTCGAATCGTGTCATCGGGTCCGGCACTAACTTGGACTCCTCACGCTTTCGTTTCCTCATCGCCGATCATCTTGATGTTAACGCTCAAGATGTCCAGGCTTTTATAGTGGGAGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGCATTAGTGTCGGGGGTGTTCCAGTGCTGAGCTTTTTGGAGAAACAGGAAATTACGTACGAGAAGGAAATGTTGGAGAGCATACACAGAGAAGTTACAGAGAGTGCTTACGAGGTTATAAGTCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCCGTGGCAAACTTGGCACGAAGCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTGTCGGTTCTTGCAAAGGGTTTCTATGATATCGATGGGGAAGTTTTTCTTAAGTTGCCGGCGCAACTTGGAAGAGGAGGGATATTGGGTGTCACCAATGTTCATTTCACTCAAGAAGAGAAACACAGGCTTATGAATTCAGCCACCACAATCCTCCAAGTTCAGAATCACTTGACTATTTGA 1056 0.5066 MAMHKSSSGSALGPGGLDLTQAFFKSVMNAAPSSPTKRHTKISVIGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSITAGSDLCIVTAGARQIHGESRLNLLQRNVTLFQKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEITYEKEMLESIHREVTESAYEVISLKGYTSWAIGYSVANLARSILRDQRRVHPVSVLAKGFYDIDGEVFLKLPAQLGRGGILGVTNVHFTQEEKHRLMNSATTILQVQNHLTI* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0358 351 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 Gene3D - 36 181 - -
Vra11g0358 351 SUPERFAMILY LDH C-terminal domain-like 180 349 IPR015955 GO:0003824|GO:0016616
Vra11g0358 351 CDD LDH_1 37 346 - -
Vra11g0358 351 Gene3D - 182 349 IPR015955 GO:0003824|GO:0016616
Vra11g0358 351 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 343 IPR022383 GO:0016616
Vra11g0358 351 Hamap L-lactate dehydrogenase [ldh]. 39 350 IPR011304 GO:0004459|GO:0005737
Vra11g0358 351 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Vra11g0358 351 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 342 IPR011304 GO:0004459|GO:0005737
Vra11g0358 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 179 IPR036291 -
Vra11g0358 351 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 3 351 - -
Vra11g0358 351 Pfam lactate/malate dehydrogenase, NAD binding domain 40 179 IPR001236 GO:0016491
Vra11g0358 351 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Vra11g0358 351 PANTHER L-LACTATE DEHYDROGENASE 3 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0358 Vra-Chr11 2595724 2596995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0358 K00016 - gmx:100818856 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0358 11 2595724 2596995 Vra11g0358 11 2595724 2596995 ECH