Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0356 ATGCGAGTGAAAGAGATGCACCAACTGTGTTGTATCTCTCTGGAGAGTCCTGGAATCGGCAACCATTCCCCGGAGCGGATGGCGGCCAGACTTTTTCAAACGAGGAGCTTCCCGGCAGTGGGATCTCTGGGCAATGCTGCTCAAAGATGGGAGACTACGGTGGCCGGCGTTCTCTACAAGTGGACCAATTACGGCAAAGGCTGGAGATCCCGATGGTTCCTCCTCAGGAACGGTGTTCTCTCTTATGCCAAGATCAGATGTCCGGAGAATCTCAACCTCCTCACTTCTTCGGACGACATTAGCTTCATCGGGGAGATTTCCACCAACCGACTCGCACGAGTGGACAGAGTTGCCCCCGCCACACGACGAAAACACCGCAAAACTTCTTCCTCTTCCCGTGTAGTCCATCTCAAGCAGATTTCATCATTTAGAGAGAGCAAGTCAGATGATAGGCGTTTCTATATATTTACAGCAACGAAAACTCTCCATCTGAGAACTGATTCGAGGAATGATCGGGTAGCGTGGATACAGGCATTGGTTTCGACACGTGGCCTGTATCCTCATCAAGCCCTCAATGATCATCTCTTGCTTACACCCAATGATATATCCGTGTCAACCGACAGGCTTAAGTCACGCTTGCTTGAAGAGGGAACCAGTGAGAACCTTGTAAAGGAGTGCGAACAAATCATGCTCTCAGAGTTCTCCGAAATGCAAGGACAACTTGAAGTTCTTTGTCAAGAACGATCTAATCTGCTTGATACAATAAGGCAATTGGAGGCAGCTAATACTGAACCTGAGGCCACTGCAATACACGATGGTGAATACCAGTTAACAAAGAACGAGTTTTCAAGTCTTGGACGTGGAAAATATAGTGAATGTAGTACAACTGAATCATCTGATGATATTGAGAAACAAGAGATGGAGGAAGTATCAGATGAAGATGAAATCTCATATTATGATACTATAGACTGTTTTACGGAGCCTGATTGCAAGTGTGAGTCAGAAAGAGCTATAAATGAAGTGGACAGGTGTAGGGAAGCCAGCACGCAATTCACTGATACAGAGAACATTTATCCTGAGAAAATGGTTTGTAATTATAAGCACCCTCAGATAGCAAGACGAAAAAAGCTTCCAGATCCTGTTGAGAAAGAGAAGGGTGTTAGTCTTTGGTCAATGATCAAGGACAACGTGGGAAAAGATCTCACGAGAGTTTGTCTCCCGGTATACTTTAATGAGCCTATATCATCCCTACAAAAATGTTGTGAGGACTTGGAGTACTCTTATCTACTGGATCTAGCTCACGAGTACGGAAAATCAGGAAACGGTCTTCTTCGGGCACTGTATGTTGCTGCCTTTGCAGTTTCGGGTTATGCGTCATCTGAAGGTCGTAACTGTAAACCCTTCAATCCCTTACTGGGTGAAACCTACGAAGCTGATTACCCGGAGAAAGGAATTCGCTTCTTTTCAGAGAAGGTCAGCCATCATCCAACACTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACAGCAACATCCATTCAAAGTTTCGGGGAAGGTCAATTCAGCTTGATCCAGTCGGTGTTCTGACCCTAGAGTTCAATGATGGTGAAATATTTCAGTGGAGCAAGGTCACCACCACGATCTATAATCTCATCCTTGGGAAAATATACTGTGATCATCATGGGAACATGGATATACGTGGCAATCGGAAGTATTCGTGCAGACTCAAGTTCAAAGAGCAGACGATACTCGACCGAAATCCTCGCCAAGTACATGGATTTGTGGAAGATGTAACGGGGAAAAAAGTTGCGACATTGTTTGGGAAGTGGGATGACAGCATGTACTATATGAGTGGTAATGTAAATGTGAAGCCTAAAGATTTGAATTCAGCAAACGCATCTTTGTTGTGGAAAAGGACGATGGCATCTCCAAATGTGAGTCGGTATAATTTGACACCATTTGCCATGACTCTGAATGAGCTTACTCCGGGACTGAAGGAGAATCTCCCGCCTACGGATTCCAGGCTTAGACCTGATCAACGACATCTAGAGAATGGGGAATACGACAAGGCTAATTTGGAGAAACAAAGGCTGGAAAAGCGTCAGAGAATGTCAAGGAAAATACAAGAAAATGGTTGGAAGCCTAGGTGGTTCCGAAGAGAAGGTGAAAGTGGAACCTTTCGATACATTGGTGGATACTGGGAAGCGAGAGAGCTTCGAAGCTGGGACGGTTGCCCTGATATATTTAGTGAAATCAATGAAGAATCTGCCGATTCATTAGGTGCATTTTAA 2304 0.4518 MRVKEMHQLCCISLESPGIGNHSPERMAARLFQTRSFPAVGSLGNAAQRWETTVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRCPENLNLLTSSDDISFIGEISTNRLARVDRVAPATRRKHRKTSSSSRVVHLKQISSFRESKSDDRRFYIFTATKTLHLRTDSRNDRVAWIQALVSTRGLYPHQALNDHLLLTPNDISVSTDRLKSRLLEEGTSENLVKECEQIMLSEFSEMQGQLEVLCQERSNLLDTIRQLEAANTEPEATAIHDGEYQLTKNEFSSLGRGKYSECSTTESSDDIEKQEMEEVSDEDEISYYDTIDCFTEPDCKCESERAINEVDRCREASTQFTDTENIYPEKMVCNYKHPQIARRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSYLLDLAHEYGKSGNGLLRALYVAAFAVSGYASSEGRNCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWADSNIHSKFRGRSIQLDPVGVLTLEFNDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRKYSCRLKFKEQTILDRNPRQVHGFVEDVTGKKVATLFGKWDDSMYYMSGNVNVKPKDLNSANASLLWKRTMASPNVSRYNLTPFAMTLNELTPGLKENLPPTDSRLRPDQRHLENGEYDKANLEKQRLEKRQRMSRKIQENGWKPRWFRREGESGTFRYIGGYWEARELRSWDGCPDIFSEINEESADSLGAF* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0356 767 SUPERFAMILY PH domain-like 53 181 - -
Vra11g0356 767 Pfam Pleckstrin homology domain 56 179 - -
Vra11g0356 767 SMART PH_update 52 186 IPR001849 -
Vra11g0356 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 339 - -
Vra11g0356 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 352 758 - -
Vra11g0356 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 352 758 IPR000648 GO:0008289
Vra11g0356 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 339 IPR000648 GO:0008289
Vra11g0356 767 Coils Coil 685 714 - -
Vra11g0356 767 MobiDBLite consensus disorder prediction 288 312 - -
Vra11g0356 767 Coils Coil 241 261 - -
Vra11g0356 767 Gene3D - 474 645 - -
Vra11g0356 767 ProSiteProfiles PH domain profile. 51 184 IPR001849 -
Vra11g0356 767 Gene3D - 47 183 IPR011993 -
Vra11g0356 767 Gene3D - 684 745 - -
Vra11g0356 767 SUPERFAMILY Oxysterol-binding protein-like 383 755 IPR037239 -
Vra11g0356 767 Pfam Oxysterol-binding protein 388 742 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0356 Vra-Chr11 2573006 2586131 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0356 K20456 - gmx:100819924 1432.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0356 11 2573006 2586131 Vra11g0356 11 2573006 2586131 ECH