Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0348 ATGGGTAAGGATCTGAGCGATGACCAAGTTTCTGCGATGAAGGAGGCTTTCTCTCTATTCGACACAGACGGCGACGGTCGGATCGCGCCTTCGGAGCTCGGGATCCTGATGCGGTCACTCGGAGGGAACCCAACCCAGGCCCAACTAAAGTCCATCGTAGCCGAAGAGAATCTCACTGCCCCATTCGACTTCCCCCGATTCCTTGATCTCATGGTCAAACACATGAAACCCGAACCCTTCGATCGCCAACTCCGTGACGCCTTCAAGGTCCTCGACAAGGATTCCACCGGCTTCGTCTCCGTTTCGGAGCTCCGACACATCCTCACCAACATCGGCGAGAAGNTGGAGCCCTCCGAGTTCGACGAGTGGATCAGGGAAGTCGACGTCGGCTCCGATGGCAAGATCCGCTACGAGGATTTCATTGCCAGAATGGTCGCTAAGTAG 444 0.5608 MGKDLSDDQVSAMKEAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKSIVAEENLTAPFDFPRFLDLMVKHMKPEPFDRQLRDAFKVLDKDSTGFVSVSELRHILTNIGEKXEPSEFDEWIREVDVGSDGKIRYEDFIARMVAK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0348 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Vra11g0348 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vra11g0348 147 Gene3D - 3 80 - -
Vra11g0348 147 CDD EFh 14 55 IPR002048 GO:0005509
Vra11g0348 147 PANTHER - 1 147 - -
Vra11g0348 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Vra11g0348 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Vra11g0348 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vra11g0348 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Vra11g0348 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Vra11g0348 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vra11g0348 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Vra11g0348 147 SMART efh_1 12 40 IPR002048 GO:0005509
Vra11g0348 147 SMART efh_1 83 111 IPR002048 GO:0005509
Vra11g0348 147 SMART efh_1 119 147 IPR002048 GO:0005509
Vra11g0348 147 CDD EFh 83 144 IPR002048 GO:0005509
Vra11g0348 147 Gene3D - 81 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0348 Vra-Chr11 2505883 2506940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0348 1 147 EF-hand Containing Proteins AT1G12310 85.811 4.22e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0348 K13448 - gmx:100527568 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0348 11 2505883 2506940 Vra11g0348 11 2505883 2506940 ECH