Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0338 ATGGCTTGTGCACACTACTACCATTGCGCGGCGAGTCTGATATTCCGGTCCGACACTGGACCTCGTTTGGGCCAGATTTTGACGCTAGAGAGTCCTCAAAGTTCGTGGCTTGGAACTGAGCTTAGGGTTTCATCATGCAGTCTCAATCTCAGAAATCACGTGCCTGTTTCACGGCGCCGGCCCCTAGCCGTCACCGTCTCCGTTAGCCTTCCCACGGCAAAACCGGAGCGTGCTTCTCCTGGCCAAAAATTTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCTAGGAAACTTAAGTATCCTACTACCGGAACTGAAGCCCTTCTCATGGGGGTTCTCATCGAGGGTACTAATCTAGCTGCCAAGTTTTTGCGAGCCAATGGAATTTCACTTCTCAAGGTTCAAGACGAAACAGTGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGCCCAGAGCATCCTCCACTGACCGATGAGGCTCAGAGAGCTCTTGATTGGGCTGTTGATCGAAAAATAAAATCTGGTGATGACGGGGAAATGACCACGGCGCACATACTTCTTGGTATCTGGTCCGAAGCTGGATCTCCTGGTCACAAGATTCTGTCCACCCTTGGCTTTAATGATGAAAAAGCTGGAGAACTTGAGTCCTTAATTTCTAAACCTGGATGTACGGATGATTGA 705 0.4823 MACAHYYHCAASLIFRSDTGPRLGQILTLESPQSSWLGTELRVSSCSLNLRNHVPVSRRRPLAVTVSVSLPTAKPERASPGQKFPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGISLLKVQDETVKLLGKGDLFFFSPEHPPLTDEAQRALDWAVDRKIKSGDDGEMTTAHILLGIWSEAGSPGHKILSTLGFNDEKAGELESLISKPGCTDD* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0338 234 Gene3D - 86 234 IPR036628 -
Vra11g0338 234 Pfam Clp amino terminal domain, pathogenicity island component 100 150 IPR004176 -
Vra11g0338 234 Pfam Clp amino terminal domain, pathogenicity island component 184 226 IPR004176 -
Vra11g0338 234 SUPERFAMILY Double Clp-N motif 86 218 IPR036628 -
Vra11g0338 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 19 234 - -
Vra11g0338 234 ProSiteProfiles Clp repeat (R) domain profile. 84 229 IPR004176 -
Vra11g0338 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 19 234 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0338 Vra-Chr11 2432964 2439001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0338 - - gmx:100527844 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0338 11 2432964 2439001 Vra11g0338 11 2432964 2439001 ECH