Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0337 ATGTCAGCAACATGTAAAGTAGGAGACAACCTAAGCTTAAACGATGAAACTAATCAACCCTTGTCACCTCCTCCTGCACTACAAGACCAAAACTATGCAGCCAATTCAGTGAAGATGCTGATCTCAGAGCTAAGAGTTCAACGAGGAATAGCCCTTCCAATGGTAGCCATGAATTTGGCTTGGTTTGCCAAGACAGCCATCACAACAGCTTTTTTAGGCCGTCTCGGGGAGCTCAGCTTAGCAGGTGGAGCTCTCGGCTTCACTTTTGCTAATGTCACTGGCTTCTCTGTTCTCAACGGTATATGCTGTGCCATGGAACCCATATGTGGCCAGGCTCATGGTGCCAAAAACTTCAGGCTCCTTCACAAGACCCTTCTCATGACAATCTTATTGTTGTTATTGGTATCGCTTCCCATCACTTTCTTGTGGCTTAATGTTGACAAAATTTTGATTAATTTTGGCCAACAGCAAGACATCTCCATTGTGGCCAGGACCTATGTTTCCTCTCTCATACCCGACTTGTTTGTTGCCTCGCTCTTCTGTCCCTTAAAGGCCTACTTGAGCTCTCAGAGCATAACTCTTCCCACCATGTTTAGTTCGGCTGTGGCACTAGCTTTCCACATACCAGTTAACATAGTGCTCTCAAAGACCATGGGCCTCAGAGGAGTCGCCATGGCGGTTTGGATTACTGATCTTATTGTTGTGATCCTGCTAGCCATTTATGTTTTAATTATTGAGAACAAAAAGGGAAGCATGTGGAAGGAAGGAGGGTGGTGGGATCAGAGCGTTGAGGATTGGATCAGGCTGGTGAAGCTTTGTGGATCATGCTGCCTCAACACGTGCCTTGAATGGTGGTGCTATGAGATCCTGGTTTTGCTTACTGGCCACCTCAAGAATGCTAAGCAAGCCGTGGGAGTTTTGGCCATTGTGCTAAACTTCGACTATTTGCTTTTCTCAGTGATGCTGTCGCTGGCCACATGTGTTTCCACCCGTGTCTCAAATGAGCTTGGTGCTAACCAAGCTGGCCTTGCTTACCGATCAGCGTATGTGTCTCTGACATTGGGTTTTATCTCTGGTTGCATAGGCAGTTTGCTGATGGTGGCTGCCAGGGGAATTTGGGGGCCACTGTTTAGCCATGATAGGGGAATTATAAAGGGAGTAAATAAGACAATGTTGCTGATGGCTGTGGTGGAAGTGTTTAATTTTCCTTTGGCAGTTTGTGGAGGCATAGTTCGAGGAACAGCACGACCTTGGTTGGGCGCATATGCGAATCTAGGTGGATTTTATTTCCTGGCCTTGCCACTTGGTATTGTTTTTGCCTTCAAACTCCGTCTTGGCCTTGTTGGACTCTTCATTGGACTTCTTGCTGGTATAGTTACCTGCTTGACGTTGTTATTGATATTCATTGCACGGTTAAACTGGGTGGAAGAAGCCGCCAAGGCACAAACACTGACAAGCATCGAGCAGGTTAAGGAACTTCCCAAATATGACGCAGAAACACGAATAGACGCCCGTGAAAAAGTATAA 1527 0.4643 MSATCKVGDNLSLNDETNQPLSPPPALQDQNYAANSVKMLISELRVQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGICCAMEPICGQAHGAKNFRLLHKTLLMTILLLLLVSLPITFLWLNVDKILINFGQQQDISIVARTYVSSLIPDLFVASLFCPLKAYLSSQSITLPTMFSSAVALAFHIPVNIVLSKTMGLRGVAMAVWITDLIVVILLAIYVLIIENKKGSMWKEGGWWDQSVEDWIRLVKLCGSCCLNTCLEWWCYEILVLLTGHLKNAKQAVGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQAGLAYRSAYVSLTLGFISGCIGSLLMVAARGIWGPLFSHDRGIIKGVNKTMLLMAVVEVFNFPLAVCGGIVRGTARPWLGAYANLGGFYFLALPLGIVFAFKLRLGLVGLFIGLLAGIVTCLTLLLIFIARLNWVEEAAKAQTLTSIEQVKELPKYDAETRIDAREKV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0337 508 Pfam MatE 276 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0337 508 Pfam MatE 53 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0337 508 TIGRFAM matE: MATE efflux family protein 53 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0337 508 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 490 - -
Vra11g0337 508 MobiDBLite consensus disorder prediction 1 26 - -
Vra11g0337 508 CDD MATE_eukaryotic 43 480 IPR045069 GO:0042910|GO:1990961
Vra11g0337 508 PANTHER PROTEIN DETOXIFICATION 56 33 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0337 Vra-Chr11 2431120 2432863 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0337 K03327 - gmx:100804083 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0337 11 2431120 2432863 Vra11g0337 11 2431120 2432863 ECH