Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0335 ATGGCCACCTCTCAGGGTGGTAACAGTAACAGGAATGGAACGCACACTCACAGAACCTCTATCAAACCTCACGTCAAGTCAAAGCCTGCTCAACGCCGTAATAGCACCGGCAAGGACCACGCTGCTGTACCTGGAAGAGTTAGAGTGGCTGTTAGATTGAGGCCACGGAACGCAGAGGAATCGGTGGCGGATGCTGACTTCGCTGATTGTGTGGAACTGCAGCCGGAGCTCAAGAGGTTGAAACTTCGGAAAAACAATTGGGATGCAGATACCTATGAGTTTGATGAGGTGCTAACCGAATTTTCCTCACAAAAACGTGTTTATGAAGTTGTTGCCAGGCCTGTTGTGGAGAGTGTTCTGGATGGCTACAATGGGACAATCATGGCGTATGGGCAAACTGGTACTGGTAAGACTTATACACTTGGACGACTTGGAGAGGAAGACAATGCTGCACGTGGAATAATGGTGCGGGCCATGGAGGATATTCTTGCACATATATCTCTTGAAACTGATTCAGTCTCAGTCTCTTATTTGCAGCTTTATATGGAGACCATACAAGATCTGCTTGACCCTGCTAATGATAACATAGCCATCGTAGAGGATCCCAAAACCGGTGATGTTTCATTACCTGGTGCTAGCCTTGTTGACATTCGAGACCAGCAGAGTTTTGTAGAACTATTAAGGTTAGGAGAGGCTCACCGCTTTGCTGCAAATACAAAATTGAATACAGAATCTTCTAGAAGTCATGCTATTCTGATGGTTCATGTAAAGAGATCTGTGAAAGGAAGAGATGCTGCTCTTTCAAGTGAAAATGGCAATCATCCACACATGGTTAAATCAATAAAGCCAACTCTTGTTCTGAAGGGCAAATTGGTTGTTGTTGACCTTGCTGGTTCAGAGCGAATTGACAAGTCAGGAAGTGAAGGACATACATTAGAAGAAGCTAAATCTATCAATCTGTCCTTGAGTGCATTGGGGAAGTGTATTAATGCACTTGCAGAGAATAGTGCACATGTGCCATTTCGTGACTCAAAGCTTACTAGATTATTACGTGATTCATTTGGAGGTACAGCAAGAACTTCATTAGTTATTACTATTGGTCCATCCCCACGACATAGGGGAGAGACTGCCAGTACTATAATGTTTGGACAGAGGGCTATGAAGGTGGAAAACATGGTAAAGTTGAAGGAGGAATTTGATTACAAAAGCTTATCTAGGAGGTTAGACATAGAATTAGATAAACTCATTGTGGAACATGAAAGGCAGCAGAAGGCATTTGAAGATGAGGTTGAAAGGTTAGCCACTGAAGCGCAACAACGAATATCTGATGCTGAAAGGAACTATGTAGATTTATTGGAGAAGGAAAGATCAAAATATCAGAAGGACTATATGGAATCAATTAAGAAGCTTGAAGAACAGTTAGTGATGAATCAACGAAAGAACGAGGAACTTCATATGAAATCTAGTGGAGAGATTCCCAGAGTGTCTCTTGAGGAACTGGCTGATTTGAAAAAAATGCTTCAGAAAGAGACTCATCTAAGAAAAGCTGCTGAAGGGGAATTAAATAATCTTAAGAGTCAAGTGGCGGAACTAAAGAAGTCAGAGGCATCAGGAAAGTCTGAGATCTTAAAACTTCACAACATGTTGGAAGATAAGGAACATCAAACAAAGAAACTTGAAGGAGAAATAGCAATATTACAAAGTCATTTGTTGCAGTTAAGACTTGAAGCTGATGAGACAAGACGACACTTTGACAGAGGTGGATTTGAAAAAGAAACAGGTGGTCCTAATTCTCTCACTGCTCAAGTTAAGCAGCAGCAACAACAACAACAAGCTTCGGGAAATGGAGAGAAGCCCTCAATAGCCAAGCTGTTTGAGCAAGTGGGATTGCAGAAAATTTTGTCTTTGCTTGAAGCTGAAGATGCTGATGTGCGAATCCATGCTGTGAAAGTTGTAGCAAATCTAGCTGCTGAAGAAACAAATCAAGGGAAGATTGTAGAAGCAGGAGGGCTCACATCCTTACTTAACCTGCTCAAGAGCTCACAAGATGAGACCATTCATAGAGTTGCTGCAGGTGCAATTGCAAATTTGGCAATGAATGAAGCCAACCAAGAACTCATCATGGTACAAGGGGGCATTAGTTTGCTGTCAATGACTGCAGCCAATGCTGAAGATCCTCAAACCCTTCGAATGGTTGCTGGAGCCATTGCTAATCTTTGTGGCAATGATAAACTACAAACGAAACTAAGGAGCGAAGGTGGTATCAAGGCACTGCTGGGAATGGTCAGATGCAGACATCCTGATGTGCATGCTCAAGTTGCTCGTGGAATAGCAAATTTTGCGAAGTGCGAGTCAAGAGCATCTAGTCAAGGTAACCTATGGACAAAGAGTGGAAGATCTTTCCTCATTGAGGATGGTGCCCTTCCATGGATTGTGCAAAATGCAAACAACGAAGCCTCATCAGTTAGGCGTCATATTGAGCTTGCACTCTGTCACTTGGCGCAACATGAAATAAATGCAAGAGACATGATTAGTGGGGGTGCATTGTGGGAACTAGTTCGTATCTCCCGTGATTGTTCAAGAGAAGATATAAAGACTCTTGCACATCGAACACTACTCTCCAGCCCCACTTTCCAAGTTGAAATGAGGCGTTTGCGGGTGAATTAA 2667 0.4286 MATSQGGNSNRNGTHTHRTSIKPHVKSKPAQRRNSTGKDHAAVPGRVRVAVRLRPRNAEESVADADFADCVELQPELKRLKLRKNNWDADTYEFDEVLTEFSSQKRVYEVVARPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDNAARGIMVRAMEDILAHISLETDSVSVSYLQLYMETIQDLLDPANDNIAIVEDPKTGDVSLPGASLVDIRDQQSFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSVKGRDAALSSENGNHPHMVKSIKPTLVLKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPFRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMFGQRAMKVENMVKLKEEFDYKSLSRRLDIELDKLIVEHERQQKAFEDEVERLATEAQQRISDAERNYVDLLEKERSKYQKDYMESIKKLEEQLVMNQRKNEELHMKSSGEIPRVSLEELADLKKMLQKETHLRKAAEGELNNLKSQVAELKKSEASGKSEILKLHNMLEDKEHQTKKLEGEIAILQSHLLQLRLEADETRRHFDRGGFEKETGGPNSLTAQVKQQQQQQQASGNGEKPSIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEETNQGKIVEAGGLTSLLNLLKSSQDETIHRVAAGAIANLAMNEANQELIMVQGGISLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRSEGGIKALLGMVRCRHPDVHAQVARGIANFAKCESRASSQGNLWTKSGRSFLIEDGALPWIVQNANNEASSVRRHIELALCHLAQHEINARDMISGGALWELVRISRDCSREDIKTLAHRTLLSSPTFQVEMRRLRVN* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0335 888 Coils Coil 416 454 - -
Vra11g0335 888 ProSiteProfiles Kinesin motor domain profile. 46 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 Gene3D Kinesin motor domain 37 419 IPR036961 -
Vra11g0335 888 MobiDBLite consensus disorder prediction 1 42 - -
Vra11g0335 888 PANTHER KINESIN-LIKE PROTEIN KIN-UA 32 881 IPR033291 GO:0008017|GO:0032886|GO:0048364
Vra11g0335 888 CDD KISc 46 387 - -
Vra11g0335 888 SUPERFAMILY ARM repeat 618 872 IPR016024 -
Vra11g0335 888 SMART kinesin_4 44 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 PANTHER KINESIN-RELATED 32 881 IPR027640 GO:0003777|GO:0007018
Vra11g0335 888 Coils Coil 542 569 - -
Vra11g0335 888 MobiDBLite consensus disorder prediction 586 617 - -
Vra11g0335 888 Pfam Kinesin motor domain 52 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 669 712 IPR000225 GO:0005515
Vra11g0335 888 SMART arm_5 742 782 IPR000225 GO:0005515
Vra11g0335 888 SMART arm_5 700 741 IPR000225 GO:0005515
Vra11g0335 888 SMART arm_5 618 657 IPR000225 GO:0005515
Vra11g0335 888 SMART arm_5 658 699 IPR000225 GO:0005515
Vra11g0335 888 Gene3D - 599 719 IPR011989 -
Vra11g0335 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 424 IPR027417 -
Vra11g0335 888 MobiDBLite consensus disorder prediction 17 31 - -
Vra11g0335 888 MobiDBLite consensus disorder prediction 1 16 - -
Vra11g0335 888 ProSitePatterns Kinesin motor domain signature. 289 300 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra11g0335 888 Gene3D - 720 876 IPR011989 -
Vra11g0335 888 PRINTS Kinesin heavy chain signature 122 143 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 PRINTS Kinesin heavy chain signature 290 308 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 PRINTS Kinesin heavy chain signature 339 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0335 888 Coils Coil 500 534 - -
Vra11g0335 888 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 628 670 IPR000225 GO:0005515
Vra11g0335 888 Pfam Armadillo/beta-catenin-like repeat 665 698 IPR000225 GO:0005515
Vra11g0335 888 MobiDBLite consensus disorder prediction 595 617 - -
Vra11g0335 888 Coils Coil 467 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0335 Vra-Chr11 2402894 2413037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0335 47 418 Miscellaneous Gene Families AT2G21380 34.805 2.87e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0335 - K10396 gmx:100801510 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0335 11 2402894 2413037 Vra11g0335 11 2402894 2413037 ECH