Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0322 ATGGACGAATCGTTCACTCCACCTCCTCCAATGTCCTCTTCCCAGCACAACCATGTCAAACGAATGCTAAATTCCAATCGCTTCAAATCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCCAGCAGATCCGCTTCCAATTTCGCTCTGTTTAACCTATCGCCGTACACGGAGGACGGTTGTAGTTGCAGCCCCTATGGCAGTGCGCTGCGGAGTGCCTTGTTTGGACCTTCCACACCCAACAAATTCGAAAGCCCTAATATATTTCGTTTCAAATCGGAGACTCGACAGTCCATGCACTCTCTTTCTCTCACTCCTTTTACTTCCCAAGATGTCCTTCTTCCTGGCTATGACTACAATCATAAGCCTCTTAAGCGCCCTCGAAAGATTCCTCCCTCGTCTTTTAAGGTTCTAGATGCGCCGGCTCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCTTCTAGCAGTAAGGTAACTAAGCTATGCGATTTGGGGGTTGACGACTCCGTTTGTTCAGTTGGCTGGGCTCCGCTTGGCACCTACTTGGCTGTCGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTAACTCAAGGCAAGTCTATAAGAACTATGGAGGGACATCGATTACGTGTTGGGACCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTAGCCGGGATAAAAGCATTTACCAGCGGGACATTCGTGTACAGGAGGATTTTGTCAGTAAACTGTCTGGGCATAAATCAGAGGTTTGTGGACTGAAGTGGTCTTACGATAACCGTGAGTTAGCATCAGGTGGAAATGACAACAAGCTACTTGTTTGGAATCAAAACTCCACCCAGCCCATCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATACAAATGGACTTCTTGCATCTGGAGGAGGTACTGCAGACCGAAGCATTCGTTTCTGGAGTACAACCACAAACTCACAGTTAAACTGCATCGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTAAATGAATTGGTGAGCACGCACGGCTACTCCCAGAATCAGATAATGGTTTGGAAGTATCCCACCATGTCAAAGCTGGCAACTCTTACAGGCCATACTTACAGAGTTCTTTATCTTTCCATTTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACCCTAAGATTTTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCATCTTTTGGAAGATCTATCATAAGGTGA 1365 0.4593 MDESFTPPPPMSSSQHNHVKRMLNSNRFKSPSKTIYSDRFIPSRSASNFALFNLSPYTEDGCSCSPYGSALRSALFGPSTPNKFESPNIFRFKSETRQSMHSLSLTPFTSQDVLLPGYDYNHKPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSSNVLAVALENSVYLWNASSSKVTKLCDLGVDDSVCSVGWAPLGTYLAVGSNSGKVQIWDVTQGKSIRTMEGHRLRVGTLAWSSSLLSSGSRDKSIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCEHTAAVKAIAWSPHTNGLLASGGGTADRSIRFWSTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHTYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRSIIR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0322 454 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Vra11g0322 454 Pfam WD domain, G-beta repeat 304 344 IPR001680 GO:0005515
Vra11g0322 454 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Vra11g0322 454 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Vra11g0322 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Vra11g0322 454 PANTHER PROTEIN FIZZY-RELATED 1 10 454 - -
Vra11g0322 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vra11g0322 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Vra11g0322 454 Gene3D - 125 433 IPR015943 GO:0005515
Vra11g0322 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 160 240 IPR024977 -
Vra11g0322 454 SMART WD40_4 219 256 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 176 216 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 302 344 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 390 429 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 132 173 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 347 387 IPR001680 GO:0005515
Vra11g0322 454 SMART WD40_4 260 299 IPR001680 GO:0005515
Vra11g0322 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Vra11g0322 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 10 454 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vra11g0322 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Vra11g0322 454 SUPERFAMILY WD40 repeat-like 145 438 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0322 Vra-Chr11 2324877 2331453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0322 254 430 Miscellaneous Gene Families AT5G08390 24.719 3.66e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0322 K03364 - gmx:100785726 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0322 11 2324877 2331453 Vra11g0322 11 2324877 2331453 ECH
Vra7g1456 7 31820854 31827727 Vra11g0322 11 2324877 2331453 PCT