Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0316 ATGGATGATGAGTTTTTCTACGGAAACAAAGCGCCATCTGGTGTCATAAAAGCAATAAAGTTTGATGTTTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGATCTATGTTGGGATTTCCAAATATATCTGACGAGTGTGTCACTTGTGGTTCTAAAGACAAAAAGTTTTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTCCTATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCAGTTTGCAAATCTATTCGTCATAAATCTAAGGGTGCTCAATTAATCTTTGGAATCAAGCAGTCTATCAATTGCAAATATTGTTCTGGAAATGGGATGGGCCGTTATCCATCGATGAAGTTTAAATTTTCGTCAAATGATCTCTACAGAAGAACAGCAATTATTGTTGAAGTGAATGATAAGGCTTCAAAGAAAACTTTGGGACGAAGCCTGCCACCTGATTATTGGGATTTTATTCCTTATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCACCAGGACAGGTTATGTCTTTGTTGAATGATGTTGATCCGAACTTCATTGAAAAATATATTCCAAGAAAAAATTTGATCAGTCTTAATTGCTTCCAAGTGACTCCGAATTGTCATCGAGTAACAGAAGTCCCTTATGCAATTTCTAATGGAAACCGATTGAGTTTTGATGAGAGGACAAAATCTTGTAAGAAATTGGTTGATTTCAGGGGTACATCTAATGAGTTAAGTTCCCGTGTTTTGGATTGCCTGAGGATTTCTAAGCTAAATCCTGATAAAACACCTAATACTATTTTTGCTGATATCCAAAAAAAAAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACGTTCCGTACTGTGGTTGTTGGTGATCCATACCTTGAGCTCAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGAGAAATGAAGGTTTGCAGAAATGGTAGTTATATTAGTCTGTTTAAAAAGGAAGATCTACAGATAGGAGACCAATTTTATAGGCCTCTTTGTGATGGGGATAAGGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGCATTAACCCACTTTGTTGTTCCCCGTTTCGCGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTTGTTGCTTTAGATAAGCAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTGAGGATAGTTTGACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTCCTCCTGGAATTGTAAAAGCTCCTTCAAGCAAAAGCTCATTTTGGAGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGGATATTCCTTTCCTTTGGATGGTGTTGTTGTTAGTGAAGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGACTGCAATGTTTTCCAGAGTCTTGTGGAACATTCTCAAGGGAAATCTCTAAACTTTTTGTTTGCTGCGCAGAATGTTTTATGTGAATGGTTGTCTATGATTGGTTTCAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAATATGATTGAGGAAATATTTTATGGTTTAGAAGATGCAGAGAAGGCATGTGATTTCAAGCAGTTATTGTTGGATTGCTATTGTGATTTTTTGTCTGGAAATCATGAAGAGAGTGAAAATTCTATGATTGTTGATGCAGACAATCTGAATAATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTACAGACAATACTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCGCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTATCTTACAGACTACCCCGTCATCTTTCATGTTCTGCTTGGAATATTGAAAAGGGGCTTGATTCAATCCAGAAATACTCTGGTACCCTTAAATCTGTTCAGTCTTACATTCCATGTGCTGTGGTCAAAAGCTCATTTCTGACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCTGTGACAACCCGTGCTAGTGGTTTCAGTGAAAATGCAGACGTTCCTGGAACATTAACACGGAGATTGATGTTCTTCATGCGTGATTTGTTTGCTGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGAACTCTTCATGTGATCAAAATTTCAAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTTTGGATCAACCAGTTAGTCTACTTGAAACGTCACCTTTGCTGAATTTGAAAAATGTTCTTGAATGTGGTTCAAGGAAAAAAAAGGGCGACCAGTCTCTGACTTTATTTTTGTCTGAAAAAGTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGCTCTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACATGATAGTCGCAGCCTAGAGAAATGCTGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTCTAACGAGAAGAAATTTGAAAGTGGATTCTATCATCGACTCTCTTTACCAGAGATATTACTCCCAGAGAAAAGAACTAAAAGTCTCTTTTACCAATTTGAAAATATCAAGCAACAGAAAGTGTTCTGGTTATTCCGCGGTTAAGGAAGGTGATGACACTTTTGTAGATAATAAAGAAGATAGTGATGATTGCATTACGGTCACAGTTGTTGAAAATTCTGAGAATCCTATCCAACTAGTTTCCGTTCGGGACTTGATGATACCCTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAGTAATCAATCAAAAGTAACAAATTCTTACAGTGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGGCCAGCGAGGGTAACACTGGAAGGTTCTGGGGTGTACTTGTAAATCATTGCCACAAGATAATGCAGATAATTGACTGGCCACGGAGTCATCCAGACAGCATAAGTTATATCTCATCAGCCTTTGGAATTGATGTAGCCTGGCAATATTATTACAAGAGTTTGGCATCTGCAATATGTGACACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTCTGTCAGCTAGTGGAGAATTTGTAGGATTAAATGCTAAAGGCATGGCACTACAACGAGAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCCGGAATCACGGATAATCTTCGGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCTCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTATCCAAGTCTGCAGATGTGTATAAGCTGCTAGAAGCCAGTTTTGAGAAGCCGAACAATAAGATTGGTATACATTCTCACAACAATTCATCTGACAAATGTGGTTCTGAGTTTAGGCATAAGAATGGCTATGCCTTTAAAGAGGGAAAACAGTGGAAAAACATTGTAAGAAATTTTCTGACGGTAAATGATATTCAGAAGCTGACTATTGCTTCAAGGTGCATATTGAACAAGTATGCGATTGATGAGCTGTTAAGTGAGTTTGACCGATCTACAATGCTAAGAGTTCTGAATTTTCATCCTCGTAGAAGTGAGAAGTTGGGTACTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTACGGATAGCCGCTGCTTCCATGTAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGAAATCGTTGATCCAAAAATGTCGAAGATCCAGAAGAAAAAATGGTCAGGACGTGATGACACAAATTCAATGCGTGTCCAAGCACAGTAA 4419 0.3852 MDDEFFYGNKAPSGVIKAIKFDVLTENDIEKVSVLEINAAGQVTGSMLGFPNISDECVTCGSKDKKFCEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIFGIKQSINCKYCSGNGMGRYPSMKFKFSSNDLYRRTAIIVEVNDKASKKTLGRSLPPDYWDFIPYDAQQEENYVNRRVLSPGQVMSLLNDVDPNFIEKYIPRKNLISLNCFQVTPNCHRVTEVPYAISNGNRLSFDERTKSCKKLVDFRGTSNELSSRVLDCLRISKLNPDKTPNTIFADIQKKKVAENACNSSGLRWIKDVVLGKRNDSTFRTVVVGDPYLELSEIGIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGEMKVCRNGSYISLFKKEDLQIGDQFYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPFRGDFDGDCLHGYIPQSVSARVELNELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLAPPGIVKAPSSKSSFWSGKQLFSMLLPSDFGYSFPLDGVVVSEGELVSSFEASGWLRDSDCNVFQSLVEHSQGKSLNFLFAAQNVLCEWLSMIGFSVSLSDLYLSSDSYARKNMIEEIFYGLEDAEKACDFKQLLLDCYCDFLSGNHEESENSMIVDADNLNNERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCSAWNIEKGLDSIQKYSGTLKSVQSYIPCAVVKSSFLTGLNPLECFVHSVTTRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIEENSSCDQNFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLETSPLLNLKNVLECGSRKKKGDQSLTLFLSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPHDSRSLEKCCPWVCHFHLDKEILTRRNLKVDSIIDSLYQRYYSQRKELKVSFTNLKISSNRKCSGYSAVKEGDDTFVDNKEDSDDCITVTVVENSENPIQLVSVRDLMIPFFLGTTIKGFMDIKKVDILWSNQSKVTNSYSGSSGELYLRVTVASEGNTGRFWGVLVNHCHKIMQIIDWPRSHPDSISYISSAFGIDVAWQYYYKSLASAICDTGKSILPKHLRLLANSLSASGEFVGLNAKGMALQREHASVSSPFVQACFSNPGRSFIKAAKSGITDNLRGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVSKSADVYKLLEASFEKPNNKIGIHSHNNSSDKCGSEFRHKNGYAFKEGKQWKNIVRNFLTVNDIQKLTIASRCILNKYAIDELLSEFDRSTMLRVLNFHPRRSEKLGTGPQDIKVGWHPKFTDSRCFHVVRTDGTVEDFSYRKCILGALEIVDPKMSKIQKKKWSGRDDTNSMRVQAQ* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0316 1472 Gene3D - 314 485 - -
Vra11g0316 1472 Gene3D RNA polymerase Rpb1, domain 3 486 627 IPR042102 -
Vra11g0316 1472 Pfam Protein of unknown function (DUF3223) 1368 1439 - -
Vra11g0316 1472 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1288 - -
Vra11g0316 1472 Gene3D RNA polymerase II, clamp domain 8 124 IPR044893 -
Vra11g0316 1472 SMART rpolaneu7 218 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vra11g0316 1472 Pfam RNA polymerase Rpb1, domain 1 16 148 IPR007080 GO:0003677|GO:0003899|GO:0006351
Vra11g0316 1472 Gene3D - 628 808 IPR038120 -
Vra11g0316 1472 CDD RNAP_IV_RPD1_N 24 855 IPR040403 -
Vra11g0316 1472 Pfam RNA polymerase Rpb1, domain 2 319 476 IPR000722 GO:0003677|GO:0003899|GO:0006351
Vra11g0316 1472 Pfam RNA polymerase Rpb1, domain 4 703 782 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vra11g0316 1472 Gene3D RNA polymerase ii 352 404 - -
Vra11g0316 1472 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 9 1360 - -
Vra11g0316 1472 PANTHER DNA-DIRECTED RNA POLYMERASE 9 1360 IPR045867 GO:0003899|GO:0006351
Vra11g0316 1472 Pfam RNA polymerase Rpb1, domain 3 483 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vra11g0316 1472 Gene3D - 1348 1441 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0316 K16250 - gmx:100796185 2434.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0316 11 2263315 2276953 Vra11g0316 11 2263315 2276953 ECH