Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0299 ATGGCAGTCACCAAAAGCCTCTCATTGTTTCTCTTCGTCGCCATAAGCTGCACCGTCGCAGCCCGGGCAGCGACCTTTAACGTCACAAATAATTGCAACTTTACGGTGTGGGCCGCCGCCGTGCCCGGTGGCGGCGTACGGCTGAACCCTAACGAGTCATGGAGCATCGACGTGGCGAACGGCACCACGGGAGGACGCATTTGGGGGCGGACAAACTGCACCTTCGACAACGCGGGACGCGGTAATTGCTTAACCGGCGACTGCGACGGTCTTCTCGTGTGCAATAACACTTACGGTACACCCCCAAACACGCTGGTGGAATTCGCGCTGAACCAGTACAACAACCTCGACTTCTACGACATCTCCCTGGTAGATGGTTTCAACCTTCCGGTTCAGTTGAACCCGACATATAACTGCAGCAGCGTAAAATGCGCCGCCGACGTCATCGGAGATTGCCCCACTCAGCTGCAGGCTCCGGGCGGTTGTAACAACCCATGCACGGTTTTTAATACGACGGAGTACTGTTGTACCTCCGGTTCTTCTGGGTGCGGTCCCACCGATTATTCGAAGTACTTCAAGGAGAAGTGCCCAGATGCATACAGTTACCCTATGGATGATGCCACCAGCACATTCACTTGCAGGGGAGGATCCGATTATAGGGTTGTCTTCTGCCCTTAA 678 0.5501 MAVTKSLSLFLFVAISCTVAARAATFNVTNNCNFTVWAAAVPGGGVRLNPNESWSIDVANGTTGGRIWGRTNCTFDNAGRGNCLTGDCDGLLVCNNTYGTPPNTLVEFALNQYNNLDFYDISLVDGFNLPVQLNPTYNCSSVKCAADVIGDCPTQLQAPGGCNNPCTVFNTTEYCCTSGSSGCGPTDYSKYFKEKCPDAYSYPMDDATSTFTCRGGSDYRVVFCP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0299 225 Gene3D Thaumatin 23 225 IPR037176 -
Vra11g0299 225 SUPERFAMILY Osmotin, thaumatin-like protein 23 225 IPR037176 -
Vra11g0299 225 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 225 - -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vra11g0299 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vra11g0299 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Vra11g0299 225 Pfam Thaumatin family 30 225 IPR001938 -
Vra11g0299 225 PANTHER OS03G0233200 PROTEIN 1 225 IPR001938 -
Vra11g0299 225 SMART tha2 26 225 IPR001938 -
Vra11g0299 225 PIRSF PR5 1 225 IPR001938 -
Vra11g0299 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vra11g0299 225 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0299 Vra-Chr11 2120912 2121876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0299 6 225 Receptor kinase-like Gene Family AT5G38280 36.179 2.14e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0299 - - gmx:100037479 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0299 11 2120912 2121876 Vra11g0299 11 2120912 2121876 ECH