Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0286 ATGAAGAGTTGCTTGGCATTCATTCATTGCTCACTGAACTTGTCGCTCTCTGCTCTCCAAGAAGTTCGAGCACCTGCAAGCGCAATGGCAAACAGTTTACCAAATGAAAAGGTTGAGTCAAGGCACACATTCCATCATCTTCCTAACGCAAACCACCACCAGCACCAGCACCATCACCAGCAGCATTCAACTGGCTTTGCTGATGCTCATTATGTAACAAAGTATGAAGCTGATGAAATGAAATCTGAACCACGACCCATGAAGCTAGTACGTACTGGTACATCAGCACAACCAGTTGATTTTGCACTTAAAGAAACTAGTCCATATCTGGGCGGGGGAAGAGTTGTTGGTGGTCGCGTTATTCATAAAGACAAAACAGCTAGTACGTATGATCTTGTAGAAAGGATGTATTTTCTGTATGTCAGGGTTGTCAAGGCTCGTGAGCTTCCTGCTATGGATATTACTGGGAGTCTTGATCCATTTGTTGAGGTGAGAATTGGCAATTACAAGGGCATTACCAGACACTTTGATAAGAATCAGAGTCCAGAATGGAACCAGGTGTTTGCCTTTTCAAAGGACCGGATGCAAGCATCCATACTAGATGTTGTGATAAAGGACAGGGATCTCATCAAAGATGATTTTGTTGGCATTGTGAGGTTTGACATCAATGAGGTTCCTTTGAGAGTCCCACCAGATAGCCCTTTAGCTCCGGAGTGGTACCGTCTTGAGGACAAGAAAGGGGAGAAGATTAAAGGTGAGTTGATGCTTGCTGTCTGGATTGGTACTCAAGCAGATGAGGCTTTTTCAGATGCATGGCATTCAGATGCAGCCACACCTGTTGACAGCACACATGCTATCTCTGCAGTGATGCGTTCAAAGGTGTATCATGCGCCAAGGTTATGGTACGTGCGTGTCAATATTGTGGAGGCACAAGACTTGGTTCCTACAGAAAAAAATCGTTTCCCAGATGTGTATGCCAAGGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCGGCACGGACGCTGAGCGCACTCTGGAATGAGGATCTTTTATTTGTTGCTGCTGAACCTTTTGAAGATCATTTAATCATTTCGGTTGAAGATCGGGTTAGTCCTGGAAAAGATGAAATCATTGGGAGGGTCATCATACCACTGAACTCTGTGGAGAGGCGTGCGGATGATAGAATCATTCATTCTCGATGGTTCAACTTGGAAAAGCCAGTTGCTATAGATGTTGATCAGTTGAAGAAGGAAAAGTTCTCAAGCAGAATTCAGCTCCGGTTATGCCTAGATGGAGGATATCATGTTCTTGACGAGTCTACTCATTATAGCAGTGATCTCCGTCCCACAGCAAAGCAATTGTGGAAGCCACCAATTGGGGTTTTAGAGCTTGGAGTACTGAATGCTGTAGGACTCCACCCAATGAAAACAAGGGATGGTAGAGGCACATCTGACACATACTGTGTAGCAAAATATGGTCACAAATGGGTCAGAACAAGGACCATTGTTGACAATCTGAGTCCAAAATACAACGAGCAATACACTTGGGAGGTTTTTGATCATGCCACAGTTCTTACAGTTGGTGTCTTCGACAACAGCCAGATCGGGGAAAAGGGTAACGGTACTTCGAAGGACTTGAAAGTTGGGAAGGTCAGAATTCGCATCTCTACTTTAGAAACAGGCAGGATTTACACTCACTCATATCCATTGTTGGTTCTTCACCCAACTGGGGTTAAGAAGATGGGTGAACTTCACTTGGCAATACGGTTTTCATGCACTTCTTTGGCAAACATGCTTTACTTGTACTCATGTCCACTGCTGCCTAAAATGCACTACGTTAGGCCTTTCTCTGTGACACAGCTAGACATGCTACGCCATCAAGCAATGAACATAGTGGCAGCACGACTCGGCCGAGCAGAGCCACCACTTCGCAAGGAAGTGGTGGAATATATGTCAGATGTGGACTCTCACCTTTGGAGCATGCGGCGAAGCAAGGCGAATTTCTTCAGACTGATGACTGTCTTCTCTGGTGTGTTCGCAGTTGGGAAGTGGTTCGGTGATATCTGCATGTGGAGAAATCCTATCACAACAGTGCTGGTTCATGTGCTGTTTCTCATGCTTGTGTGCTTCCCAGAATTGATCTTGCCCACTGTTTTTCTCTACATGTTTTTGATTGGGGTGTGGAACTTCAGATATAGACCAAGGTACCCTCCTCACATGAACACAAGAATCTCACAAGCTGAGGCAGTGCACCCTGATGAACTGGATGAAGAGTTTGACACTTTCCCAACGAGCAGAAGCCCAGACCTTGTGAGAATGAGGTATGATCGCTTGAGGAGTGTGGCTGGAAGGATTCAAACAGTGATTGGGGATTTGGCCAGCCAGGGAGAAAGGATTCAGGCACTGTTAAGCTGGAGAGACCCTCGTGCTACATCCTTATTTATTACGTTGTGTCTTCTATCTGCGTTGGTGCTCTACGTTACCCCTTTTCAAGCTGTGGCTGGTTTGGCAGGTTTCTACATCATGAGGCATCCAAGGTTTCGCCACAGGCTGCCATGTGTCCCAATCAACTTTTTCCGACGCCTCCCCGCAAGAACAGACAGTATGTTGTAG 2622 0.4573 MKSCLAFIHCSLNLSLSALQEVRAPASAMANSLPNEKVESRHTFHHLPNANHHQHQHHHQQHSTGFADAHYVTKYEADEMKSEPRPMKLVRTGTSAQPVDFALKETSPYLGGGRVVGGRVIHKDKTASTYDLVERMYFLYVRVVKARELPAMDITGSLDPFVEVRIGNYKGITRHFDKNQSPEWNQVFAFSKDRMQASILDVVIKDRDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTHAISAVMRSKVYHAPRLWYVRVNIVEAQDLVPTEKNRFPDVYAKVQIGNQVLKTKTVPARTLSALWNEDLLFVAAEPFEDHLIISVEDRVSPGKDEIIGRVIIPLNSVERRADDRIIHSRWFNLEKPVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIGVLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIVDNLSPKYNEQYTWEVFDHATVLTVGVFDNSQIGEKGNGTSKDLKVGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSLANMLYLYSCPLLPKMHYVRPFSVTQLDMLRHQAMNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWFGDICMWRNPITTVLVHVLFLMLVCFPELILPTVFLYMFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFDTFPTSRSPDLVRMRYDRLRSVAGRIQTVIGDLASQGERIQALLSWRDPRATSLFITLCLLSALVLYVTPFQAVAGLAGFYIMRHPRFRHRLPCVPINFFRRLPARTDSML* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0286 873 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 463 595 IPR035892 -
Vra11g0286 873 CDD C2C_MCTP_PRT_plant 302 452 - -
Vra11g0286 873 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 137 276 IPR035892 -
Vra11g0286 873 CDD C2B_MCTP_PRT_plant 138 262 - -
Vra11g0286 873 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 75 873 - -
Vra11g0286 873 Pfam C2 domain 301 406 IPR000008 -
Vra11g0286 873 Pfam C2 domain 464 573 IPR000008 -
Vra11g0286 873 Pfam C2 domain 139 233 IPR000008 -
Vra11g0286 873 Gene3D C2 domain 460 597 IPR035892 -
Vra11g0286 873 CDD C2D_MCTP_PRT_plant 464 590 - -
Vra11g0286 873 ProSiteProfiles C2 domain profile. 446 571 IPR000008 -
Vra11g0286 873 SMART C2_3c 302 400 IPR000008 -
Vra11g0286 873 SMART C2_3c 464 570 IPR000008 -
Vra11g0286 873 SMART C2_3c 138 234 IPR000008 -
Vra11g0286 873 Gene3D C2 domain 120 260 IPR035892 -
Vra11g0286 873 Gene3D C2 domain 283 433 IPR035892 -
Vra11g0286 873 ProSiteProfiles C2 domain profile. 280 405 IPR000008 -
Vra11g0286 873 ProSiteProfiles C2 domain profile. 120 240 IPR000008 -
Vra11g0286 873 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 75 873 - -
Vra11g0286 873 Pfam Plant phosphoribosyltransferase C-terminal 718 873 IPR013583 -
Vra11g0286 873 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 301 454 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0286 Vra-Chr11 2021744 2028170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0286 37 873 Lipid Metabolism Gene Families AT4G11610 79.108 0.0 1412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0286 - - gmx:100777951 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0286 11 2021744 2028170 Vra11g0286 11 2021744 2028170 ECH