Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0260 ATGGCAGCTTCTTCGTTGGCAGCATCTTCCATCCTCCTTCCATTCACAACAAACCCTAAATCCCCTAACCTATTTGCCTCTTTCCCTTGCAAAAACAATACCCTCCTTCCCAGCCTCCGTCTCAGACACATCTCAGCCTCAGCCTCAGCTGCTTCAATCCCAACCCCTTCCGTTCAAGTTGACAACTCTCCACCCTCCGCCGCACCTTCCAAAGTTCTCCCCTTTCGTGTCGGTCATGGTTTCGACCTCCATCGCTTGGAACCCGGTTACCCGTTAATCATCGGCGGCATTAACATACCCCACGAAAGAGGTTGCGAGGCTCACTCCGATGGGGACGTTCTGCTTCACTGCGTCGTTGATGCTATTTTGGGGGCGTTAGGTCTTCCTGATATAGGCCAAATATTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGACTCTTCAGTCTTCATCAAAGAATCTGTTAGACTTATGCATGAAGCCGGTTATGAAATTGGAAATTTAGATGCTACATTGATACTTCAGCGGCCAAAACTAAGCCCGCACAAGGACACTATCAAAGCCAACTTATCTGCACTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAAAAGGTGGACAGCCTTGGGGAGAATAGAAGTATAGCGGCTCACACAGTGGTTCTTTTAATGAAGAAATGA 696 0.4741 MAASSLAASSILLPFTTNPKSPNLFASFPCKNNTLLPSLRLRHISASASAASIPTPSVQVDNSPPSAAPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0260 231 Gene3D - 72 231 IPR036571 GO:0008685|GO:0016114
Vra11g0260 231 SUPERFAMILY IpsF-like 74 230 IPR036571 GO:0008685|GO:0016114
Vra11g0260 231 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 6 231 IPR003526 GO:0008685|GO:0016114
Vra11g0260 231 CDD MECDP_synthase 76 228 IPR003526 GO:0008685|GO:0016114
Vra11g0260 231 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 109 124 IPR020555 GO:0008685
Vra11g0260 231 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 75 230 IPR003526 GO:0008685|GO:0016114
Vra11g0260 231 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 6 231 - -
Vra11g0260 231 Pfam YgbB family 75 228 IPR003526 GO:0008685|GO:0016114
Vra11g0260 231 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 76 230 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0260 K01770 - gmx:100306378 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0260 11 1795719 1797764 Vra11g0260 11 1795719 1797764 ECH