Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0258 ATGATGGGGTACAATTTGGTGTTCATTGTTGTGTTCTTGTGGAGTTCAATGGTTATTCACAATGGATTAGCCATGATGGAGGACGGGAAGTTGACGAGCTCCTCAGGCTCACCTAATTATGATTATGCAGATGCTCTTGGCAAAGCCATTTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCGTCAAACCAAAGAGTGAAGTGGAGGGAAGACTCCGCTCTCTCTGATGGCAAACTTCAAAACGTGAATTTGATTGGAGGGTATTACGATGCTGGTGATAACGTGAAGTTTGGATGGCCGATGGCATTTGCTACGAGCTTATTGAGTTGGGCTGCTGTAGAGTACGAGAGTGAGATATCTTCGGTGAACCAGCTTGGTTATCTCCAAAGTGCTATTCGTTGGGGTGCAGACTTCATACTCAGGGCCCATGCTTCCCCAACCACCCTCTATACACAGGTTGGAGACGGGAACGCTGATCACAACTGTTGGGAGCGACCAGAAGACATGGATACACCAAGGACAGTGTATAAGATAGATGCGAATTCTCCAGGAACTGAAGCCGCAGCTGAGTCTGCTGCTGCTCTTTCTGCCGCTTCAATTGTATTCAGGAAAATAGATGCCAAGTATTCCTCCACGCTATTAAGCCATTCAAAATCACTGTTTGATTTTGCAGACAAGAATAGAGGTTCTTATTCCGGTTCTTGCCCATTCTATTGCTCGTACTCCGGTTACCAGGATGAACTGCTATGGGCGGCTGCTTGGTTGTACAAGGCAAGTGGAGAAAGCAAGTATCTGACCTACATCATAGGTAACCAAGGATCGAGCCAGGCTGTGTCTGAATTCAGCTGGGACAACAAATTTGTTGGGGCTCAGACATTGCTAACCGAGGAATTCTACGGTGGAAAGAAAGAACTGACCAAGATTAAGAGTGACGCTGAGTCATTTATATGCTCTGTGATGCCAGGAAGTAGCTCTCGACAGATTAAAACAACTCCTGGTGGTCTTTTGTTTACTAGAGATAGTAGCAATTTGCAATATACCACGAGCTCGACCATGGTGCTGTTCATTTTTTCTAGAATCCTAAACAGAAATCACATCAACGGAATCAATTGTGGCTCCGCGCATTTCACACCGTCTCAAATTAGAGCCTTTGCCAAAACACAGGTGGACTACATATTAGGAAATAATCCGATGAAGATGTCGTATATGGTGGGTTTTGGCAGCAAATATCCAAAGCAATTACATCACAGAGCTTCGTCCATACCTTCAATCAAAGTTCACCCAGCGAAGGTGGGTTGCAATGGTGGTCTATCAGATTATTACAATTCTCCTAATCCAAATCCCAATACTCATGTGGGTGCAATTGTTGGAGGCCCTGATTCAAATGACCATTTCAATGATGCAAGATCTGACTATTCCCACACCGAGCCTACCACATACATGAATGCTGCTTTCGTCGCTTCAGTCTCTGCTTTGCTTGCCAAAACCTAA 1494 0.4491 MMGYNLVFIVVFLWSSMVIHNGLAMMEDGKLTSSSGSPNYDYADALGKAILFFEGQRSGKLPSNQRVKWREDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFATSLLSWAAVEYESEISSVNQLGYLQSAIRWGADFILRAHASPTTLYTQVGDGNADHNCWERPEDMDTPRTVYKIDANSPGTEAAAESAAALSAASIVFRKIDAKYSSTLLSHSKSLFDFADKNRGSYSGSCPFYCSYSGYQDELLWAAAWLYKASGESKYLTYIIGNQGSSQAVSEFSWDNKFVGAQTLLTEEFYGGKKELTKIKSDAESFICSVMPGSSSRQIKTTPGGLLFTRDSSNLQYTTSSTMVLFIFSRILNRNHINGINCGSAHFTPSQIRAFAKTQVDYILGNNPMKMSYMVGFGSKYPKQLHHRASSIPSIKVHPAKVGCNGGLSDYYNSPNPNPNTHVGAIVGGPDSNDHFNDARSDYSHTEPTTYMNAAFVASVSALLAKT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0258 497 SUPERFAMILY Six-hairpin glycosidases 39 495 IPR008928 GO:0005975
Vra11g0258 497 PANTHER ENDO-1,4-BETA-GLUCANASE 7 495 - -
Vra11g0258 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Vra11g0258 497 Gene3D - 37 497 IPR012341 GO:0005975
Vra11g0258 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Vra11g0258 497 Pfam Glycosyl hydrolase family 9 42 488 IPR001701 GO:0004553|GO:0005975
Vra11g0258 497 PANTHER ENDOGLUCANASE 18-RELATED 7 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0258 Vra-Chr11 1787590 1790429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0258 23 497 Glycoside Hydrolase AT4G23560 69.474 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0258 - - gmx:547834 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0258 11 1787590 1790429 Vra11g0258 11 1787590 1790429 ECH