Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0236 ATGGATGAAGAATTGGTCGATGAGGCAACCCAATTGGTGGTTGCTGAGGATTCACAGCGCCAGAACAAAGATTCACCACACACGGAATGCCGAAAAATCTTACAATCTCAAGAAGCCCGTATTCCTGTTAAGCATGACTACTCGCAGTTACCACCTCGGGAATATGATGGCGTTCTACATGGTAAAAGTATAGTTGAAGGTATTGACCACGCAGATACATCACAGCATCCTGGTGTAAGCCTTTTTATGGATGACGGTGATGCTATGGTTGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATTGGTACATCAAACAACCGAGGGCAAATGTATGCTTGGCAGAACCATAGGCAGAATTTTTATCAGGTTGCAAGTAATTCCGGAATTGTAAATTCACTAAGTGATATCGGAACTAGAAATAGTGTCCAGGCCACATCCAGTGCTCGGGAGGATATCGGATCCTCATCTTTCCCGGAGATACTGGCTAGAAAATCTCTCAGCGATGGCCAGAGCAATGTCATGGAGCACTTGGCAGCTGCTGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACAAAAATTATATCCCAATCAGGATTTGCGGAGTTTTTCATAAAAAATACACTGAAGGGTAAGGGTATTGTCTATAGAGGTCCGTCGTATGATGCCTTCTGTGCTCAGTCCAGAGAGCAAAACCGGATGAAGACTAACATTGGCACTGAACAGAATCAGATGAGGACCAGCATTGGCATAGAGCAGAATCAGATGAGAACCAGCATTGGCACAGAGCAGAATCAGATGAGGAGAAGCATTGGCACCGAGAAGAATCAGATGAGGAGCAGCATTGACACTGATCAGAATCAAACTAGGACCAGCATTAGCATAGATCAGAATCAGATAAAGATTGGCGTTGGCACAGATCAGAACCAGACGAAGACTAGCATTGGCACAGATCAGAATCAGATGAAGAATAACACCGGTACTGATCAGAAACAGACGAAGACTGGTATTGTTACTCACTTGAACTCTAATCAATCTGTGGGCTATGGTTCGAAAACCACAAAGTTTTCTTCTTATTTTGGTGCTATGGCTAGATCTGGCAAGTCTGAATGTAATGGTGTGACTTTGAGAGAATGGCTGAAACATGGGCACCACAAAACTAGCAAAGTGGAAAGTTTGAATATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAACCTATGTCCATCTAATATTAAATTGTCGCCATCAAACCAAGTCATGTACCTTGGTTTGCCTGTTCAAAAACGAATGGTGGATGGTGTTATAAATTCTGAAGTTGTCCACGTAGATAGTTCTGTTATTAGAAAAAGGCAGTCAGAGCAAGTAACATCTTCCTCTCATGAAATGGGGTCAAAGAAGCAAAGGCTTAATGAGAATTTGAGGGTTACTGGTGGTGACTTGGGTCTTGAAACTGCAAGTGATAGGAAACTTCATAGCGGATCACAGGATATTTACAATGAATATGAGGAAGATACCCAATTTTCTAAATATAACATTGGAAGAATGTCTAGCATTCCTCATGTATCTAATGCCGGTCAAATTCCATTGACTTCTTGTGAAAAATTTGAAAATAAATGGTACACAAGTCCCGAGGGAGGTTACACAACATCATCAAATATATACTGTCTTGGTGTCCTCCTTTTTGAGTTACTTGGTCATTTTGAGTCTGAAAGAACGCATATTGCAGCAATGTCTGATCTTCGACATAGGATTCTTCCTCCAATTTTCCTATCAGAAAACCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCAGAACCGTCATCACGTCCAACAACAAGGGAAATTCTTCAGTCTGAATTGATTAATGGATTGCAAGAGTTCTTTAGTGAGGAATTGTCATCAAGTATTGACCAAGAGGATGCAGAATCGGAATTGTTATTACATTTCCTTGTTTTGCTAAAAGAGCAGAAGCAGAACAATGCTTTCAAACTGGCAGAGGAAATCAAGTGCTTGGAATCAGATATAGGAGAGGTGGAGAGGAGGCACGACTCGAGAAATTCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAAGAAGGAATCTTCAAGTTTAGAAATGCTGCCCTCAATATCCCCAAACTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCCTCAACTCACCCTGATAAAGATGTACTAAGAAATCGTGAGAACTGGAACGTGGCCCAAAAAAGTGAGGAACAACCTAAAAGGAGAGATACTTTAGGGACATTCTTTGATGGTTTGTGCAAGTATGCACGGTATTCCAGATTTGAAGTGCGTGGTGTACTAAGAAATGCTGATTTTAACAATCCTGCAAATGTCATTTGCTCTTTAAGCTTTGATCGGGATGCAGATTACTTTGCCTCGGCTGGGATATCTAAGAAAATAAAAATTTTTGAGTTTAGTGCACTTTGCAATGACTCTGTTGATATCCATTATCCTGTGGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAAAACTATCTTGCATCTACAGATTATGACGGCATAGTGAAGTTATGGGATGCAAGTACGGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAAAGGGCGTGGTCTGTTGACTTCTCTGTAGTATGCCCCACGAAATTTGCCAGTGGAAGTGATGATTGCACTGTCAAGCTATGGAGCATCAGTGAGAGGAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGCTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTATATTGGCTGGCCATCGTAAGGCCGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCCTCTACTGATAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCATCCACTAATGCTTGCAGCCTAACCCTGTCAGGACACACCAACGAAAAGAATTTTGTGGGTCTGTCAGTGGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATTCCTACTATAGATCGCTTCCCATGCCAATCACTTCCCACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACAGAGGATGACAATGGACAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAATTCCGACATGCTTATTGCAGCCAATTCAAGTGGATGTGTGAAAGTGTTACAGATGGTTTGA 3450 0.4139 MDEELVDEATQLVVAEDSQRQNKDSPHTECRKILQSQEARIPVKHDYSQLPPREYDGVLHGKSIVEGIDHADTSQHPGVSLFMDDGDAMVEELTVKSYNGSSLDIGTSNNRGQMYAWQNHRQNFYQVASNSGIVNSLSDIGTRNSVQATSSAREDIGSSSFPEILARKSLSDGQSNVMEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYRGPSYDAFCAQSREQNRMKTNIGTEQNQMRTSIGIEQNQMRTSIGTEQNQMRRSIGTEKNQMRSSIDTDQNQTRTSISIDQNQIKIGVGTDQNQTKTSIGTDQNQMKNNTGTDQKQTKTGIVTHLNSNQSVGYGSKTTKFSSYFGAMARSGKSECNGVTLREWLKHGHHKTSKVESLNIFRKIVDLVDNSHSQGVALHNLCPSNIKLSPSNQVMYLGLPVQKRMVDGVINSEVVHVDSSVIRKRQSEQVTSSSHEMGSKKQRLNENLRVTGGDLGLETASDRKLHSGSQDIYNEYEEDTQFSKYNIGRMSSIPHVSNAGQIPLTSCEKFENKWYTSPEGGYTTSSNIYCLGVLLFELLGHFESERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQEFFSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLAEEIKCLESDIGEVERRHDSRNSLVSSGLQNDYSCQKEIMPLKKESSSLEMLPSISPNSNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKDVLRNRENWNVAQKSEEQPKRRDTLGTFFDGLCKYARYSRFEVRGVLRNADFNNPANVICSLSFDRDADYFASAGISKKIKIFEFSALCNDSVDIHYPVVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCILAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASTNACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYSYYRSLPMPITSHKFGSIDPISGKDTEDDNGQFVSSVCWRGNSDMLIAANSSGCVKVLQMV* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0236 1149 SUPERFAMILY WD40 repeat-like 832 1147 IPR036322 GO:0005515
Vra11g0236 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 923 IPR001680 GO:0005515
Vra11g0236 1149 SUPERFAMILY Protein kinase-like (PK-like) 378 646 IPR011009 -
Vra11g0236 1149 PANTHER PROTEIN SPA1-RELATED 2 1 297 IPR044630 GO:0009640
Vra11g0236 1149 PANTHER PROTEIN SPA1-RELATED 2 270 1149 IPR044630 GO:0009640
Vra11g0236 1149 ProSitePatterns Trp-Asp (WD) repeats signature. 901 915 IPR019775 -
Vra11g0236 1149 Gene3D - 808 1149 IPR015943 GO:0005515
Vra11g0236 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 966 IPR001680 GO:0005515
Vra11g0236 1149 MobiDBLite consensus disorder prediction 1 28 - -
Vra11g0236 1149 ProSitePatterns Trp-Asp (WD) repeats signature. 1028 1042 IPR019775 -
Vra11g0236 1149 MobiDBLite consensus disorder prediction 315 339 - -
Vra11g0236 1149 Gene3D Transferase(Phosphotransferase) domain 1 378 648 - -
Vra11g0236 1149 MobiDBLite consensus disorder prediction 467 487 - -
Vra11g0236 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 1010 1050 IPR001680 GO:0005515
Vra11g0236 1149 PANTHER PROTEIN SPA1-RELATED 2 1 297 - -
Vra11g0236 1149 PANTHER PROTEIN SPA1-RELATED 2 270 1149 - -
Vra11g0236 1149 SMART WD40_4 960 999 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 875 914 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 1003 1041 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 1052 1091 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 1099 1147 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 825 864 IPR001680 GO:0005515
Vra11g0236 1149 SMART WD40_4 917 957 IPR001680 GO:0005515
Vra11g0236 1149 PRINTS G protein beta WD-40 repeat signature 901 915 IPR020472 -
Vra11g0236 1149 PRINTS G protein beta WD-40 repeat signature 944 958 IPR020472 -
Vra11g0236 1149 PRINTS G protein beta WD-40 repeat signature 1028 1042 IPR020472 -
Vra11g0236 1149 Coils Coil 673 700 - -
Vra11g0236 1149 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1010 1043 - -
Vra11g0236 1149 Pfam WD domain, G-beta repeat 919 957 IPR001680 GO:0005515
Vra11g0236 1149 Pfam WD domain, G-beta repeat 1009 1041 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0236 Vra-Chr11 1588323 1599071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0236 900 986 Miscellaneous Gene Families AT5G08390 31.111 8.29e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0236 K16240 - gmx:100784300 1979.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0236 11 1588323 1599071 Vra11g0236 11 1588323 1599071 ECH