Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0235 ATGTCTTCATCGAAAGAGGCGGACCCAACCCTGGGTTACCTCACTCGGAAGGACACGGAGGTGAAGCTTCCGCGTCCAACCAGGGTCAAGAATAAAACCCCCGCTCCAATCCAAATCACCGCCGAGCAAATTCTCCGGGAGGCTCGGGAGCGTCAAGAGGCGGAGATCCGCCCTCCTAAGCAGAAAATCACCGACTCCACCGAGCTTGGCGAGTACCGTCTTCGCAAGCGCAAAGAGTTCGAGGACCTTATCCGCCGTGTTCGATGGAACATTGGCGTGTGGATCAAGTATGCGCAGTGGGAGGAATCGCAGAAGGACTTCAAACGCGCGCGTTCCGTTTGGGAGAGAGCGCTGGAGGTGGATTACAAGAATCACACGCTCTGGCTCAAGTACGCGGAGGTCGAGATGAAGAACAAGTTCATAAACCACGCGCGCAACGTGTGGGATCGCGCCGTCACGCTTCTGCCCAGGGTGGATCAGCTGTGGTATAAGTACATTCACATGGAGGAGATGCTAGGCAATGTCGCCGGCGCGAGGCAGGTTTTCGAGAGGTGGATGAAATGGACACCGGACCAGCAGGGATGGCTGTCCTACATAAAGTTTGAGCTTAGGTACAACGAAATTGAGCGCGCCAGAGGGATTTTCGAGCGATTTGTTGACTGCCACCCTCGGGTTGGGGCTTGGATACGCTATGCCAAGTTTGAGATGAAGAATGGCGAGGTTGGGAAGGCTAGAACCGTGTACGAGAGAGCCGTGGATAAGCTATCTGATGATGAGGAAGCAGAGCAGTTATTTGTTGCTTTTGCGGAGTTTGAGGAAAGGTGTAAGGAGACTGAGCGTGCAAGAGCTATCTATAAGTTTGCTCTGGATCATATTCCCAAGGGAAGGGCGGAAGATTTGTATAGAAAATTTGTGGCATTTGAGAAGCAGTATGGGGACAGGGAAGGGATAGAGGATGCCATCGTTGGGAAGAGAAGGTTTCAGTATGAGGACGAAGTGAGGAAGAATCCGTTGAATTATGATTCCTGGTTTGACTACATAAGGTTGGAGGAAAGTGTGGGGAATAAGGAAAGGATCAGGGAGGTTTATGAGCGGGCCATAGCCAATGTCCCCCCGGCGGAGGAGAAGCGCTACTGGCAGCGCTATATTTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGGGATGCTGAGCGAACTAGGGATGTATACAGGGAGTGCCTCAACCTTATACCTCACAATAAGTTTTCGTTTGCAAAAATATGGCTTCTAGCAGCTCAATTTGAAATACGTCAACTGAATCTCAAGGCTGCTCGACAAATATTAGGAAATGCCATTGGAAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAAATAGAACTGCAACTTGGTAATATAGACCGGTGCAGAAAATTATATGAAAAATATCTGGAGTGGTCTCCAGAAAATTGTTATGCTTGGAGCAAGTATGCTGAGTTGGAGAGATCGCTATCTGAGACCGAACGAGCACGAGGAATTTTTGAGCTCGCAATTGCCCAACCAGCGTTGGACATGCCAGAGCTCTTGTGGAAGGCATTCATTGACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGACAGAACAAAGCACTTGAAGGTATGGATAAGCTACGCTGAATTTGAGGCAACAGCTATGGATGTGGACAATGTAGACTTGTCGGAACATGAACAAAAGAAGCAATGCATTGAGCGTGCTAGAAGGGTGTTTGAGAAGGCTCTCAACTACTTCAGATCATCGGCTCCAGATTTGAAAGAAGAAAGGGCAATGTTATTGGAAAAATGGCTCAACATGGAGAGTACATTTGGAGAGCTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAAAAGAGAAGGCACGTTGCCACCGAAGATGGTTCTACTAGAATTGAAGAATTTATCGACTTTTTGTTCCCTGAAGAAAGCCAGACAACTAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAGTTGTCTTCCGACGATTAA 2088 0.4765 MSSSKEADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNIGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWTPDQQGWLSYIKFELRYNEIERARGIFERFVDCHPRVGAWIRYAKFEMKNGEVGKARTVYERAVDKLSDDEEAEQLFVAFAEFEERCKETERARAIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDAERTRDVYRECLNLIPHNKFSFAKIWLLAAQFEIRQLNLKAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETERARGIFELAIAQPALDMPELLWKAFIDFETAEGEFERARALYERLLDRTKHLKVWISYAEFEATAMDVDNVDLSEHEQKKQCIERARRVFEKALNYFRSSAPDLKEERAMLLEKWLNMESTFGELGDVSLVQSKLPKKLKKRRHVATEDGSTRIEEFIDFLFPEESQTTNLKILEAAYKWKKQKLSSDD* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0235 695 MobiDBLite consensus disorder prediction 1 35 - -
Vra11g0235 695 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Vra11g0235 695 Pfam Tetratricopeptide repeat 466 488 IPR019734 GO:0005515
Vra11g0235 695 Coils Coil 534 554 - -
Vra11g0235 695 SMART hat_new_1 105 137 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 276 310 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 436 467 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 503 537 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 398 434 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 71 103 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 239 274 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 206 237 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 469 501 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 539 570 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 320 352 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 173 204 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 139 171 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 354 388 IPR003107 GO:0006396
Vra11g0235 695 SMART hat_new_1 587 620 IPR003107 GO:0006396
Vra11g0235 695 PANTHER PRE-MRNA SPLICING FACTOR 22 695 IPR045075 GO:0000398
Vra11g0235 695 SUPERFAMILY TPR-like 81 205 IPR011990 GO:0005515
Vra11g0235 695 PANTHER - 22 695 - -
Vra11g0235 695 MobiDBLite consensus disorder prediction 11 27 - -
Vra11g0235 695 Gene3D Tetratricopeptide repeat domain 322 537 IPR011990 GO:0005515
Vra11g0235 695 Gene3D Tetratricopeptide repeat domain 122 321 IPR011990 GO:0005515
Vra11g0235 695 SUPERFAMILY TPR-like 268 523 IPR011990 GO:0005515
Vra11g0235 695 Gene3D Tetratricopeptide repeat domain 539 668 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0235 K12869 - gmx:100811745 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0235 11 1578142 1582930 Vra11g0235 11 1578142 1582930 ECH