Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0232 ATGGCGAAGGAAATTTTGACTCTTGATAATGCGACAACCTGCACATCTTGGAACCTTTCCGGTACCAGACTCGCTGCTGCTTCCGCTGATGGCACACTTTCAATCTTCGATTCCCGCGATCCATCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGGTTCTCGAAGGAAACATCGTGAAGATTGTTTGGGTTCCACCAGAGTACGGTGATGCAGTCGCGTGTATTTCCGCCGATGGAATTATGTCACTGTGGGAGGAGGTTGCAGAAGATTCGCAGTCTCTTCAGTGGAAGATGTGCAAAAGCTTTGGAGACAGTTCAAGCAAAGTCCTTGATGTTCAATTCGGGATCTCTTCGACTAGTTTGAAAATGGTTGCAGCATATTCAGATGGCAATATAAGAGTTTTTGAGCTCTTGGACCCCTTAGAACTGAGAAACTTGCAGCTTCAGGCTGAATTTCAAAATGTTATCGAGTCGGTGTCTGCATTTGGAAAGGCTTCGTGCCTCTCTGCATCCATATCTTGGAATCTACAAAAGGGTGGAAGCCAGGAATCAAGCTTCCTTGTAGGTTTTAATTCAAATACATCAGAGCTTAATTCTTCGAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCGGTAGCAGAATTGGCACTGCCTGAAGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCGTATGAGATCATAGCGGTTGCAACTCACAAGGGACTTGCAATATGGCATCTTGGATTGAACCCTGACCATGATGGAAGACTCCCGGTAGAGCGAGTTGCACTACTCTCAGGTCACCAGGGCATGGTGTGGCAAATGGAATGGGATATGAGTGGAATGACGTTGGCTACTACAGGGCAAGATGGAATGGTCCGATTATGGCAGTCTAATCTCAATGGCGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCGTAG 981 0.4638 MAKEILTLDNATTCTSWNLSGTRLAAASADGTLSIFDSRDPSSSSSLRSTFKSRVLEGNIVKIVWVPPEYGDAVACISADGIMSLWEEVAEDSQSLQWKMCKSFGDSSSKVLDVQFGISSTSLKMVAAYSDGNIRVFELLDPLELRNLQLQAEFQNVIESVSAFGKASCLSASISWNLQKGGSQESSFLVGFNSNTSELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVALLSGHQGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVWHQQAAFEPTS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0232 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
Vra11g0232 326 PANTHER NUCLEOPORIN SEH1 3 325 IPR037597 GO:1904263
Vra11g0232 326 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 3 325 IPR037363 GO:0005198
Vra11g0232 326 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Vra11g0232 326 SUPERFAMILY WD40 repeat-like 9 310 IPR036322 GO:0005515
Vra11g0232 326 Gene3D - 9 323 IPR015943 GO:0005515
Vra11g0232 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Vra11g0232 326 SMART WD40_4 44 87 IPR001680 GO:0005515
Vra11g0232 326 SMART WD40_4 270 309 IPR001680 GO:0005515
Vra11g0232 326 SMART WD40_4 97 138 IPR001680 GO:0005515
Vra11g0232 326 SMART WD40_4 213 258 IPR001680 GO:0005515
Vra11g0232 326 SMART WD40_4 1 37 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0232 K14299 - gmx:100780788 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0232 11 1558080 1560863 Vra11g0232 11 1558080 1560863 ECH