Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0035 ATGGAGGGAACCGAAGCCGTAGCGAAGGGTGACGGCGACGGAGATGGTAGCGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGCTAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAAGTTCAGAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAAAACGAGGAACGCAAGGAGGCTTTTATTAACCAGAAAATTCAGAACTTGCGAATTCAGTGTGCTAAGCTCGCACAAGCAGACCTGGCCCACTATCGCAAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGACCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCTGTGGAGACTTTAAGTAATCCTACATTACAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAGAAGTATACTTACTATAGTGATTTGACTAGAAAAGTTTTCCGGATATACGACCCCAATTTCATTGCTGGTAGCCTTGACGAAGCATACCTTGATATAACTGAAGTTATCAAAGAAAGGAATGTCAAAGGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACCGGTCTCACATGCAGTGCTGGAGTGGCACCAAATCGCTTACTTGCCAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACAGAACATATTTTAAAGGGAGTTTTTGAAATTAACACATGTGAGCAGATACTCGAGAAGAGTAGCTACCTTTATGCACTTTTCTCTCAGTCAACAGCAGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAAACAGATTCTCCCCAAGTAAGATCTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACTGAAGATGAGGTGTTATTGCATAAAAAGTTAGTGGAGCTTGCTGAAATGCTATCGGCTGACATGCAGAAAGAGGGTCTGTGTGGGCGAACTTTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACCAGAGCTGTGACTTTACAAAAGTACATCAGCTCAACTGAGGATATCTTGAAGCATGCTAAAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATGGGCCTTAGAGTATCTCAGTTTAATGGAGAAAAATGTAGTGCTACGCCTGATCCTACACAGAAGACCATTACCAACTTCATTACTTCGGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTCGCAGATGGTGACTTTGTCGGTGATGCAAAAACCAATCTTTCCGTTGGCAATCAGCAGACGAGTCAACTTGATTGGAGAGATCCTTTTGTCGGTAACTATTTGTCAGATGGAGATTACGAAAGTTGTGTTCTCCAGAAAAATGATGGTATAGAAGAGGTACAAACACCTAGTAAGGATGCTACAAGTTCTCACCACAGTGGATTTACAGAAGCGCTGGGATCTACTTCTTTCCAGGAGCAGTTTGAAGGCATAAATGTGCTGAATGAATCTAAGCTCCTGGAACTTAATTCTTGTTCTCAGGAGACGACAATGTTGTGGCTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTATTGAGGAAAGATTGGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAACCATGTGTTCCTAGTGGAAGTCGGGCTCAAAAGGATGGAATCACTACACAAAGCAAATCTAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAAATTTACACCCATTGATTCTTTTTTTGTTAAAAAGTAA 2007 0.418 MEGTEAVAKGDGDGDGSDRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEAFINQKIQNLRIQCAKLAQADLAHYRKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRIYDPNFIAGSLDEAYLDITEVIKERNVKGEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFEINTCEQILEKSSYLYALFSQSTAEFFCSVGLGLGQTDSPQVRSRKSISNERTFSATEDEVLLHKKLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSTEDILKHAKKLLKAELPISVRLMGLRVSQFNGEKCSATPDPTQKTITNFITSGDVNRNCSSFPDVADGDFVGDAKTNLSVGNQQTSQLDWRDPFVGNYLSDGDYESCVLQKNDGIEEVQTPSKDATSSHHSGFTEALGSTSFQEQFEGINVLNESKLLELNSCSQETTMLWLNDYKCSLCGIELPPSFIEERLEHSDFHLAEKLQKEESRIHQPCVPSGSRAQKDGITTQSKSKKQKLSQKEGKFTPIDSFFVKK* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0035 668 Coils Coil 57 77 - -
Vra11g0035 668 Gene3D - 28 114 - -
Vra11g0035 668 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 17 648 - -
Vra11g0035 668 SUPERFAMILY DNA/RNA polymerases 85 337 IPR043502 -
Vra11g0035 668 Pfam impB/mucB/samB family 113 257 IPR001126 GO:0006281
Vra11g0035 668 MobiDBLite consensus disorder prediction 641 655 - -
Vra11g0035 668 Gene3D - 266 339 - -
Vra11g0035 668 CDD PolY_Pol_IV_kappa 111 443 IPR022880 GO:0003887
Vra11g0035 668 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 344 441 IPR036775 GO:0003684|GO:0006281
Vra11g0035 668 Pfam Ubiquitin-Binding Zinc Finger 587 620 IPR041298 -
Vra11g0035 668 MobiDBLite consensus disorder prediction 1 18 - -
Vra11g0035 668 PANTHER DNA POLYMERASE KAPPA 17 648 - -
Vra11g0035 668 ProSiteProfiles Zinc finger UBZ3-type profile. 583 620 IPR041298 -
Vra11g0035 668 MobiDBLite consensus disorder prediction 622 668 - -
Vra11g0035 668 ProSiteProfiles UmuC domain profile. 110 290 IPR001126 GO:0006281
Vra11g0035 668 Gene3D - 127 175 - -
Vra11g0035 668 Pfam impB/mucB/samB family C-terminal domain 346 446 IPR017961 GO:0003684|GO:0006281
Vra11g0035 668 Gene3D - 343 449 IPR036775 GO:0003684|GO:0006281
Vra11g0035 668 MobiDBLite consensus disorder prediction 1 22 - -
Vra11g0035 668 Gene3D - 115 265 IPR043128 -
Vra11g0035 668 PIRSF DNA_pol_eta 102 222 - -
Vra11g0035 668 PIRSF DNA_pol_eta 219 467 - -
Vra11g0035 668 PIRSF DNA_pol_eta 511 668 - -
Vra11g0035 668 Hamap DNA polymerase IV [dinB]. 107 459 IPR022880 GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0035 Vra-Chr11 286000 290351 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0035 K03511 - gmx:100816973 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0035 11 286000 290351 Vra11g0035 11 286000 290351 ECH