Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0032 ATGGGTATCCGATCGGTGTTTGACGGCGGCGAGCTGAGAAGAGAATTTGAGAAGAACGGAATTGACGGAAAATTCGTTGGGATAATATGGAAGCATGTGATCGGAAATAATGCGAAGGGAGAAAGTGGAGAATGGGATTGGGAGAAACAAGTGCCATCGCTGCCATCTTCAGCGTACTCTGTCCTTCGTTCCAACTTCGGAGGAACGAACCCTCTCTCTTCTTCTCTTCACTCCGTTTTCCACTCTTCCGACAACCTCACTTCCAAGCTCCTCATCAAGCTCCACAACGGGGAATTCGTGGAGGCTGTGATAATGAGATACGATACTCGTTTGGGAAAATACGCCGGCAAACCGCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTCTCTTCCGGGGAAATTGTGGAACAGCTCGTCCATGCTTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGGATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCATTTCAGTTGTCCTTGAAAAGGATTACCGTATCAACGGTTGGTATCATCCATGCTATCAACAAGCTTCACAATGACCTGCCTGGTTTGAACTTGGCAGTCTCTCTGCATGCACCAGCCCAAGACATCCGTTGTCAGATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATACTGATTGAATACATAATGCTTGACGGGGTGAATGATGAAGAACAGCATGCCCACCAATTGGGAAAACTATTAGAGACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACCCTATCGGTACCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTCAGAGGTACATATAATATTCGAACAACAGTTAGGAAGCAGATGGGTCAAGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCAGACAAGTCTCTTGCCCGTGCAGAACCCCTCACAGACATAGAAGATCTTGTTATTTGA 1146 0.4503 MGIRSVFDGGELRREFEKNGIDGKFVGIIWKHVIGNNAKGESGEWDWEKQVPSLPSSAYSVLRSNFGGTNPLSSSLHSVFHSSDNLTSKLLIKLHNGEFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLARAEPLTDIEDLVI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0032 381 Pfam 4Fe-4S single cluster domain 134 218 - -
Vra11g0032 381 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 78 358 IPR027492 GO:0030488|GO:0070475
Vra11g0032 381 PANTHER 23S RRNA METHYLTRANSFERASE 3 371 IPR040072 -
Vra11g0032 381 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 371 - -
Vra11g0032 381 SUPERFAMILY Radical SAM enzymes 126 325 - -
Vra11g0032 381 PIRSF Cfr 11 374 IPR004383 GO:0006364|GO:0008173
Vra11g0032 381 SFLD adenosine C2 methyltransferase (RlmN-like) 81 365 IPR004383 GO:0006364|GO:0008173
Vra11g0032 381 CDD Radical_SAM 134 335 - -
Vra11g0032 381 Gene3D Aldolase class I 75 366 IPR013785 -
Vra11g0032 381 Pfam Radical SAM superfamily 130 288 IPR007197 GO:0003824|GO:0051536
Vra11g0032 381 ProSiteProfiles Radical SAM core domain profile. 121 350 IPR007197 GO:0003824|GO:0051536
Vra11g0032 381 SFLD methyltransferase (Class A) 81 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0032 Vra-Chr11 269111 271502 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0032 - - ccaj:109814608 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0032 11 269111 271502 Vra11g0032 11 269111 271502 ECH